1 HAMP#1
158-227 aa · 70 aa · 15.2% of protein
Raw token
HAMP:158:0.00000297:227:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AAAW81_RS01730
Histidine kinase, Classic
Bifidobacterium adolescentis · GCF_040092835
ClassHKTypeClassicLength462 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040092835#AAAW81_RS01730Stable P2CS identifier used across views.
GenomeGCF_040092835Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length462 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 462 aa (53.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa462 aa
Domain-by-domain annotation3 items
2 HisKA#2
239-306 aa · 68 aa · 14.7% of protein
Raw token
HisKA:239:0.00000000437:306:68:643 HATPase_c#3
353-462 aa · 110 aa · 23.8% of protein
Raw token
HATPase_c:353:5.16e-22:462:111:109- Raw architecture: HAMP:158:0.00000297:227:70:69#HisKA:239:0.00000000437:306:68:64#HATPase_c:353:5.16e-22:462:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040092835::NZ_JBBNKV010000001.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span415948-418025Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAAAW81_01745RefSeq proteinWP_349051342.1
Context group ID
GCF_040092835::NZ_JBBNKV010000001.1::G00004Context members
AAAW81_RS01725AAAW81_RS01730
Partner locus tags
AAAW81_RS01725AAAW81_RS01730
Partner old locus tags
AAAW81_01740AAAW81_01745
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_349051342.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAAAW81_RS01730Primary locus identifier stored in the genes table.
Old locus tagAAAW81_01745Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBBNKV010000001.1Sequence record reported by the local genomic context database.
Genomic interval416 637-418 025 nt1 389 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span415 948-418 025 ntGCF_040092835::NZ_JBBNKV010000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040092835::NZ_JBBNKV010000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBBNKV010000001.1All displayed genes belong to this local TCS context.
Neighborhood span415 948-418 025 nt2 078 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
415 948 nt418 025 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AAAW81_RS01725GCF_040092835#AAAW81_RS01725
RROmpR
415 948-416 610 nt · Forward (+)
AAAW81_RS01730GCF_040092835#AAAW81_RS01730
HKClassicCurrent focus
416 637-418 025 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_040092835#AAAW81_RS01730The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1817310
Simplified PFAM architecture for HKOC_1817310
PFAM domain coverage: 175 / 462 aa (37.9%)
1 aa462 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[239-303] | HATPase_c[353-462]
- Domain count: 2
- Matched identifier: HKOC_1817310
- Positioned domains: HisKA 239-303 ; HATPase_c 353-462
Cluster members and taxonomy
Representative gene: GCF_040092835#AAAW81_RS01730
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 680 · GCF_040092835
AssemblyASM4009283v1 · Contighaploid
Genome composition2 279 175 bp · 59,0% GCBifidobacterium adolescentis
Signal transduction countsGenes 28 · HK 12 · RR 14CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key