1 HAMP#1
58-129 aa · 72 aa · 19.7% of protein
Raw token
HAMP:58:0.00000000172:129:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABLX66_RS03645
Histidine kinase, Classic
Hungatella hominis · GCF_039946375
ClassHKTypeClassicLength365 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_039946375#ABLX66_RS03645Stable P2CS identifier used across views.
GenomeGCF_039946375Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length365 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 365 aa (67.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa365 aa
Domain-by-domain annotation3 items
2 HisKA#2
136-200 aa · 65 aa · 17.8% of protein
Raw token
HisKA:136:9.62e-20:200:65:643 HATPase_c#3
245-354 aa · 110 aa · 30.1% of protein
Raw token
HATPase_c:245:2.13e-31:354:111:109- Raw architecture: HAMP:58:0.00000000172:129:72:69#HisKA:136:9.62e-20:200:65:64#HATPase_c:245:2.13e-31:354:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_039946375::NZ_JBDOJH010000003.1::G00024
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span74453-76218Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_039946375::NZ_JBDOJH010000003.1::G00024Context members
ABLX66_RS03645ABLX66_RS03650
Partner locus tags
ABLX66_RS03645ABLX66_RS03650
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117631978.1Primary protein accession used for annex mappings.
UniProt accessionA0A374P4R4Primary UniProt accession resolved in the annex database.
UniProt IDA0A374P4R4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABLX66_RS03645Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBDOJH010000003.1Sequence record reported by the local genomic context database.
Genomic interval74 453-75 550 nt1 098 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span74 453-76 218 ntGCF_039946375::NZ_JBDOJH010000003.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_039946375::NZ_JBDOJH010000003.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBDOJH010000003.1All displayed genes belong to this local TCS context.
Neighborhood span74 453-76 218 nt1 766 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
74 453 nt76 218 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ABLX66_RS03645GCF_039946375#ABLX66_RS03645
HKClassicCurrent focus
74 453-75 550 nt · Reverse (-)
ABLX66_RS03650GCF_039946375#ABLX66_RS03650
RROmpR
75 547-76 218 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437645#DXC88_RS14425Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2719936
Simplified PFAM architecture for HKOC_2719936
PFAM domain coverage: 173 / 365 aa (47.4%)
1 aa365 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[136-199] | HATPase_c[246-354]
- Domain count: 2
- Matched identifier: HKOC_2719936
- Positioned domains: HisKA 136-199 ; HATPase_c 246-354
Cluster members and taxonomy
Representative gene: GCF_003437645#DXC88_RS14425
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 763 050 · GCF_039946375
AssemblyASM3994637v1 · Scaffoldhaploid
Genome composition7 382 838 bp · 49,0% GCHungatella hominis
Signal transduction countsGenes 274 · HK 137 · RR 134CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key