1 HisKA#1
270-336 aa · 67 aa · 10.2% of protein
Raw token
HisKA:270:1.47e-16:336:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABLX66_RS00245
Histidine kinase, Hybrid
Hungatella hominis · GCF_039946375
ClassHKTypeHybridLength654 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_039946375#ABLX66_RS00245Stable P2CS identifier used across views.
GenomeGCF_039946375Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length654 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage303 / 654 aa (46.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa654 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
382-500 aa · 119 aa · 18.2% of protein
Raw token
HATPase_c:382:9.57e-31:500:119:1093 Response_reg#3
527-643 aa · 117 aa · 17.9% of protein
Raw token
Response_reg:527:8.46e-27:643:117:111- Raw architecture: HisKA:270:1.47e-16:336:67:64#HATPase_c:382:9.57e-31:500:119:109#Response_reg:527:8.46e-27:643:117:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_039946375::NZ_JBDOJH010000001.1::G00003
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span49357-51322Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_039946375::NZ_JBDOJH010000001.1::G00003Context members
ABLX66_RS00245
Partner locus tags
ABLX66_RS00245
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_347992067.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABLX66_RS00245Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBDOJH010000001.1Sequence record reported by the local genomic context database.
Genomic interval49 357-51 322 nt1 966 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span49 357-51 322 ntGCF_039946375::NZ_JBDOJH010000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_039946375::NZ_JBDOJH010000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBDOJH010000001.1All displayed genes belong to this local TCS context.
Neighborhood span49 357-51 322 nt1 966 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
49 357 nt51 322 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ABLX66_RS00245GCF_039946375#ABLX66_RS00245
HKHybridCurrent focus
49 357-51 322 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437645#DXC88_RS00395Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0502800
Simplified PFAM architecture for HKOC_0502800
PFAM domain coverage: 301 / 844 aa (35.7%)
1 aa844 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[460-526] | HATPase_c[572-689] | Response_reg[717-832]
- Domain count: 3
- Matched identifier: HKOC_0502800
- Positioned domains: HisKA 460-526 ; HATPase_c 572-689 ; Response_reg 717-832
Cluster members and taxonomy
Representative gene: GCF_003437645#DXC88_RS00395
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 763 050 · GCF_039946375
AssemblyASM3994637v1 · Scaffoldhaploid
Genome composition7 382 838 bp · 49,0% GCHungatella hominis
Signal transduction countsGenes 274 · HK 137 · RR 134CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key