1 HisKA_3#1
54-116 aa · 63 aa · 9.3% of protein
Raw token
HisKA_3:54:1.52e-17:116:63:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABHV35_RS03665
Histidine kinase, Classic
Bifidobacterium adolescentis · GCF_039760155
ClassHKTypeClassicLength681 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_039760155#ABHV35_RS03665Stable P2CS identifier used across views.
GenomeGCF_039760155Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length681 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage150 / 681 aa (22.0%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa681 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
165-251 aa · 87 aa · 12.8% of protein
Raw token
HATPase_c:165:0.0000000000019:251:103:109- Raw architecture: HisKA_3:54:1.52e-17:116:63:68#HATPase_c:165:0.0000000000019:251:103:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_039760155::NZ_JBDMVA010000001.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span825759-829194Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_039760155::NZ_JBDMVA010000001.1::G00007Context members
ABHV35_RS03665ABHV35_RS03670
Partner locus tags
ABHV35_RS03665ABHV35_RS03670
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_430385231.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABHV35_RS03665Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBDMVA010000001.1Sequence record reported by the local genomic context database.
Genomic interval825 759-828 368 nt2 610 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span825 759-829 194 ntGCF_039760155::NZ_JBDMVA010000001.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_039760155::NZ_JBDMVA010000001.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBDMVA010000001.1All displayed genes belong to this local TCS context.
Neighborhood span825 759-829 194 nt3 436 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
825 759 nt829 194 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ABHV35_RS03665GCF_039760155#ABHV35_RS03665
HKClassicCurrent focus
825 759-828 368 nt · Forward (+)
ABHV35_RS03670GCF_039760155#ABHV35_RS03670
RRNarL
828 445-829 194 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_039760155#ABHV35_RS03665The current gene is the representative for this cluster.
PFAM architectureHisKA_3 + HATPase_c + DUF71343 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0814972
Simplified PFAM architecture for HKOC_0814972
PFAM domain coverage: 281 / 681 aa (41.3%)
1 aa681 aa
HisKA_3HATPase_cDUF7134
- Simplified architecture: HisKA_3 + HATPase_c + DUF7134
- Raw architecture: HisKA_3[54-116] | HATPase_c[165-252] | DUF7134[366-495]
- Domain count: 3
- Matched identifier: HKOC_0814972
- Positioned domains: HisKA_3 54-116 ; HATPase_c 165-252 ; DUF7134 366-495
Cluster members and taxonomy
Representative gene: GCF_039760155#ABHV35_RS03665
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 680 · GCF_039760155
AssemblyASM3976015v1 · Scaffoldhaploid
Genome composition2 173 918 bp · 59,5% GCBifidobacterium adolescentis
Signal transduction countsGenes 29 · HK 13 · RR 15CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key