1 Response_reg#1
1-74 aa · 74 aa · 60.7% of protein
Raw token
Response_reg:1:0.00000335:74:74:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABHU79_RS06795
Response regulator, CheY family
Bifidobacterium longum · GCF_039759205
ClassRRTypeCheYLength122 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_039759205#ABHU79_RS06795Stable P2CS identifier used across views.
GenomeGCF_039759205Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length122 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage74 / 122 aa (60.7%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:1:0.00000335:74:74:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_039759205::NZ_JBDMTB010000015.1::G00005
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span821-1189Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_039759205::NZ_JBDMTB010000015.1::G00005Context members
ABHU79_RS06795
Partner locus tags
ABHU79_RS06795
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_007058044.1Primary protein accession used for annex mappings.
UniProt accessionA0AAV3FMC2Primary UniProt accession resolved in the annex database.
UniProt IDA0AAV3FMC2_BIFLLDisplay identifier provided by UniProt.
GO / PubMed0 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABHU79_RS06795Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBDMTB010000015.1Sequence record reported by the local genomic context database.
Genomic interval821-1 189 nt369 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span821-1 189 ntGCF_039759205::NZ_JBDMTB010000015.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_039759205::NZ_JBDMTB010000015.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBDMTB010000015.1All displayed genes belong to this local TCS context.
Neighborhood span821-1 189 nt369 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
821 nt1 189 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ABHU79_RS06795GCF_039759205#ABHU79_RS06795
RRCheYCurrent focus
821-1 189 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000261205#HMPREF1315_RS12360Use this link to inspect the representative gene detail.
PFAM architectureNo PFAM architecture availablePFAM architecture is attached when the local PFAM databases provide a match.
PFAM architecture for RROC_2403120
No PFAM cluster architecture is available for the current selection on this server.
Cluster members and taxonomy
Representative gene: GCF_000261205#HMPREF1315_RS12360
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_039759205
AssemblyASM3975920v1 · Scaffoldhaploid
Genome composition2 404 055 bp · 60,5% GCBifidobacterium longum
Signal transduction countsGenes 22 · HK 10 · RR 11CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key