1 Response_reg#1
1-74 aa · 74 aa · 60.7% of protein
Raw token
Response_reg:1:0.00000335:74:74:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1315_RS12360
Response regulator, CheY family
Bifidobacterium longum subsp. longum 2-2B · GCF_000261205
ClassRRTypeCheYLength122 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000261205#HMPREF1315_RS12360Stable P2CS identifier used across views.
GenomeGCF_000261205Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length122 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage74 / 122 aa (60.7%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:1:0.00000335:74:74:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000261205::NZ_AJTJ01000047.1::G00004
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span497-865Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1315_0472RefSeq proteinWP_007058044.1
Context group ID
GCF_000261205::NZ_AJTJ01000047.1::G00004Context members
HMPREF1315_RS12360
Partner locus tags
HMPREF1315_RS12360
Partner old locus tags
HMPREF1315_0472
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_007058044.1Primary protein accession used for annex mappings.
UniProt accessionA0AAV3FMC2Primary UniProt accession resolved in the annex database.
UniProt IDA0AAV3FMC2_BIFLLDisplay identifier provided by UniProt.
GO / PubMed0 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1315_RS12360Primary locus identifier stored in the genes table.
Old locus tagHMPREF1315_0472Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AJTJ01000047.1Sequence record reported by the local genomic context database.
Genomic interval497-865 nt369 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span497-865 ntGCF_000261205::NZ_AJTJ01000047.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000261205::NZ_AJTJ01000047.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AJTJ01000047.1All displayed genes belong to this local TCS context.
Neighborhood span497-865 nt369 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
497 nt865 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF1315_RS12360GCF_000261205#HMPREF1315_RS12360
RRCheYCurrent focus
497-865 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000261205#HMPREF1315_RS12360The current gene is the representative for this cluster.
PFAM architectureNo PFAM architecture availablePFAM architecture is attached when the local PFAM databases provide a match.
PFAM architecture for RROC_2403120
No PFAM cluster architecture is available for the current selection on this server.
Cluster members and taxonomy
Representative gene: GCF_000261205#HMPREF1315_RS12360
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 161 745 · GCF_000261205
AssemblyBlongum22Bv1.0 · Contighaploid
Genome composition2 625 697 bp · 59,5% GCBifidobacterium longum subsp. longum 2-2B
Signal transduction countsGenes 22 · HK 9 · RR 11CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key