1 Response_reg#1
10-123 aa · 114 aa · 50.0% of protein
Raw token
Response_reg:10:6.61e-17:123:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABHS11_RS03010
Response regulator NarL family
Bifidobacterium pseudocatenulatum · GCF_039753675
ClassRRTypeNarLLength228 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_039753675#ABHS11_RS03010Stable P2CS identifier used across views.
GenomeGCF_039753675Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 228 aa (75.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
165-222 aa · 58 aa · 25.4% of protein
Raw token
HTH_LUXR:165:5.56e-27:222:58:58- Raw architecture: Response_reg:10:6.61e-17:123:114:111#HTH_LUXR:165:5.56e-27:222:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_039753675::NZ_JBDMIM010000005.1::G00004
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span89161-89847Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_039753675::NZ_JBDMIM010000005.1::G00004Context members
ABHS11_RS03010
Partner locus tags
ABHS11_RS03010
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_347056148.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABHS11_RS03010Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBDMIM010000005.1Sequence record reported by the local genomic context database.
Genomic interval89 161-89 847 nt687 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span89 161-89 847 ntGCF_039753675::NZ_JBDMIM010000005.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_039753675::NZ_JBDMIM010000005.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBDMIM010000005.1All displayed genes belong to this local TCS context.
Neighborhood span89 161-89 847 nt687 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
89 161 nt89 847 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ABHS11_RS03010GCF_039753675#ABHS11_RS03010
RRNarLCurrent focus
89 161-89 847 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_039753675#ABHS11_RS03010The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1339887
Simplified PFAM architecture for RROC_1339887
PFAM domain coverage: 169 / 228 aa (74.1%)
1 aa228 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[10-122] | GerE[167-222]
- Domain count: 2
- Matched identifier: RROC_1339887
- Positioned domains: Response_reg 10-122 ; GerE 167-222
Cluster members and taxonomy
Representative gene: GCF_039753675#ABHS11_RS03010
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 28 026 · GCF_039753675
AssemblyASM3975367v1 · Scaffoldhaploid
Genome composition2 226 461 bp · 56,5% GCBifidobacterium pseudocatenulatum
Signal transduction countsGenes 27 · HK 11 · RR 14CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key