1 GGDEF#1
137-275 aa · 139 aa · 21.2% of protein
Raw token
GGDEF:137:1.43e-38:275:151:160P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABHS82_RS00135
Response regulator, RpfG family
Blautia wexlerae · GCF_039753435
ClassRRTypeRpfGLength657 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_039753435#ABHS82_RS00135Stable P2CS identifier used across views.
GenomeGCF_039753435Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
GGDEFResponse_regHD
Protein length657 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage352 / 657 aa (53.6%)Merged over positioned domains only.
Domain description1 GGDEF,1 Response_reg,1 HDSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa657 aa
Domain-by-domain annotation3 items
2 Response_reg#2
303-414 aa · 112 aa · 17.0% of protein
Raw token
Response_reg:303:3.39e-30:414:113:1113 HD#3
495-595 aa · 101 aa · 15.4% of protein
Raw token
HD:495:0.00000000000629:595:101:110- Raw architecture: GGDEF:137:1.43e-38:275:151:160#Response_reg:303:3.39e-30:414:113:111#HD:495:0.00000000000629:595:101:110
- Domain description: 1 GGDEF,1 Response_reg,1 HD
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_039753435::NZ_JBDMIA010000001.1::G00001
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span30330-32303Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_039753435::NZ_JBDMIA010000001.1::G00001Context members
ABHS82_RS00135
Partner locus tags
ABHS82_RS00135
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_347027478.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABHS82_RS00135Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBDMIA010000001.1Sequence record reported by the local genomic context database.
Genomic interval30 330-32 303 nt1 974 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span30 330-32 303 ntGCF_039753435::NZ_JBDMIA010000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_039753435::NZ_JBDMIA010000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBDMIA010000001.1All displayed genes belong to this local TCS context.
Neighborhood span30 330-32 303 nt1 974 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
30 330 nt32 303 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ABHS82_RS00135GCF_039753435#ABHS82_RS00135
RRRpfGCurrent focus
30 330-32 303 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_039753435#ABHS82_RS00135The current gene is the representative for this cluster.
PFAM architectureGGDEF + Response_reg + HD_53 domains in the representative PFAM annotation.
PFAM architecture for RROC_0035383
Simplified PFAM architecture for RROC_0035383
PFAM domain coverage: 387 / 657 aa (58.9%)
1 aa657 aa
GGDEFResponse_regHD_5
- Simplified architecture: GGDEF + Response_reg + HD_5
- Raw architecture: GGDEF[136-277] | Response_reg[303-414] | HD_5[482-614]
- Domain count: 3
- Matched identifier: RROC_0035383
- Positioned domains: GGDEF 136-277 ; Response_reg 303-414 ; HD_5 482-614
Cluster members and taxonomy
Representative gene: GCF_039753435#ABHS82_RS00135
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_039753435
AssemblyASM3975343v1 · Scaffoldhaploid
Genome composition4 450 031 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 151 · HK 75 · RR 74CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key