1 HisKA#1
449-514 aa · 66 aa · 9.8% of protein
Raw token
HisKA:449:0.00000000344:514:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABCQ60_RS09800
Histidine kinase, Classic
Clostridioides difficile · GCF_038755505
ClassHKTypeClassicLength671 aaTM0ValidatedNoCompleteYesContextpentad
Gene IDGCF_038755505#ABCQ60_RS09800Stable P2CS identifier used across views.
GenomeGCF_038755505Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length671 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 671 aa (25.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa671 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
565-668 aa · 104 aa · 15.5% of protein
Raw token
HATPase_c:565:4.17e-30:668:104:109- Raw architecture: HisKA:449:0.00000000344:514:66:64#HATPase_c:565:4.17e-30:668:104:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpentadGCF_038755505::NZ_JBBBMW010000007.1::G00031
Group size55 locus tags listed below.
HK / RR2 / 3Counts resolved for the local TCS neighborhood.
Context span43881-49605Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_038755505::NZ_JBBBMW010000007.1::G00031Context members
ABCQ60_RS09785ABCQ60_RS09790ABCQ60_RS09795ABCQ60_RS09800ABCQ60_RS09805
Partner locus tags
ABCQ60_RS09785ABCQ60_RS09790ABCQ60_RS09795ABCQ60_RS09800ABCQ60_RS09805
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021422693.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABCQ60_RS09800Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBBBMW010000007.1Sequence record reported by the local genomic context database.
Genomic interval46 841-48 856 nt2 016 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span43 881-49 605 ntGCF_038755505::NZ_JBBBMW010000007.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_038755505::NZ_JBBBMW010000007.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpentadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBBBMW010000007.1All displayed genes belong to this local TCS context.
Neighborhood span43 881-49 605 nt5 725 nt
Members51 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
43 881 nt49 605 nt
Neighborhood gene cards
5 genes in the current local neighborhood.
ABCQ60_RS09785GCF_038755505#ABCQ60_RS09785
HKClassic
43 881-44 996 nt · Reverse (-)
ABCQ60_RS09790GCF_038755505#ABCQ60_RS09790
RROmpR
45 032-45 730 nt · Reverse (-)
ABCQ60_RS09795GCF_038755505#ABCQ60_RS09795
RROmpR
46 111-46 791 nt · Reverse (-)
ABCQ60_RS09800GCF_038755505#ABCQ60_RS09800
HKClassicCurrent focus
46 841-48 856 nt · Reverse (-)
ABCQ60_RS09805GCF_038755505#ABCQ60_RS09805
RROmpR
48 928-49 605 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000451765#QSM_RS02260Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0842607
Simplified PFAM architecture for HKOC_0842607
PFAM domain coverage: 170 / 671 aa (25.3%)
1 aa671 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[450-514] | HATPase_c[563-667]
- Domain count: 2
- Matched identifier: HKOC_0842607
- Positioned domains: HisKA 450-514 ; HATPase_c 563-667
Cluster members and taxonomy
Representative gene: GCF_000451765#QSM_RS02260
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 44 over 44 total members. Page 1 / 1.
GCF_000451765#QSM_RS02260 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_038755505
AssemblyASM3875550v1 · Scaffoldhaploid
Genome composition4 166 631 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 107 · HK 51 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key