1 Response_reg#1
4-113 aa · 110 aa · 49.3% of protein
Raw token
Response_reg:4:1.85e-28:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABCN78_RS07170
Response regulator OmpR family
Clostridioides difficile · GCF_038755115
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_038755115#ABCN78_RS07170Stable P2CS identifier used across views.
GenomeGCF_038755115Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 223 aa (81.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-221 aa · 71 aa · 31.8% of protein
Raw token
Trans_reg_C:151:2.11e-20:221:72:77- Raw architecture: Response_reg:4:1.85e-28:113:111:111#Trans_reg_C:151:2.11e-20:221:72:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_038755115::NZ_JBBBMI010000005.1::G00021
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span231764-232435Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_038755115::NZ_JBBBMI010000005.1::G00021Context members
ABCN78_RS07170
Partner locus tags
ABCN78_RS07170
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_176482320.1Primary protein accession used for annex mappings.
UniProt accessionA0A564SHN7Primary UniProt accession resolved in the annex database.
UniProt IDA0A564SHN7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABCN78_RS07170Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBBBMI010000005.1Sequence record reported by the local genomic context database.
Genomic interval231 764-232 435 nt672 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span231 764-232 435 ntGCF_038755115::NZ_JBBBMI010000005.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_038755115::NZ_JBBBMI010000005.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBBBMI010000005.1All displayed genes belong to this local TCS context.
Neighborhood span231 764-232 435 nt672 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
231 764 nt232 435 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ABCN78_RS07170GCF_038755115#ABCN78_RS07170
RROmpRCurrent focus
231 764-232 435 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002303425#BGU60_RS04325Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1597094
Simplified PFAM architecture for RROC_1597094
PFAM domain coverage: 182 / 223 aa (81.6%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[150-221]
- Domain count: 2
- Matched identifier: RROC_1597094
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 150-221 ; Trans_reg_C 150-221
Cluster members and taxonomy
Representative gene: GCF_002303425#BGU60_RS04325
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_038755115
AssemblyASM3875511v1 · Contighaploid
Genome composition3 987 928 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 104 · HK 51 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key