1 HisKA#1
242-306 aa · 65 aa · 14.0% of protein
Raw token
HisKA:242:0.00000000000203:306:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABCN78_RS00105
Histidine kinase, Classic
Clostridioides difficile · GCF_038755115
ClassHKTypeClassicLength463 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_038755115#ABCN78_RS00105Stable P2CS identifier used across views.
GenomeGCF_038755115Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length463 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage174 / 463 aa (37.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa463 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
353-461 aa · 109 aa · 23.5% of protein
Raw token
HATPase_c:353:1.4e-19:461:109:109- Raw architecture: HisKA:242:0.00000000000203:306:65:64#HATPase_c:353:1.4e-19:461:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_038755115::NZ_JBBBMI010000001.1::G00001
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span21583-22974Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_038755115::NZ_JBBBMI010000001.1::G00001Context members
ABCN78_RS00105
Partner locus tags
ABCN78_RS00105
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_373276602.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABCN78_RS00105Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBBBMI010000001.1Sequence record reported by the local genomic context database.
Genomic interval21 583-22 974 nt1 392 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span21 583-22 974 ntGCF_038755115::NZ_JBBBMI010000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_038755115::NZ_JBBBMI010000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBBBMI010000001.1All displayed genes belong to this local TCS context.
Neighborhood span21 583-22 974 nt1 392 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
21 583 nt22 974 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ABCN78_RS00105GCF_038755115#ABCN78_RS00105
HKClassicCurrent focus
21 583-22 974 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_038755115#ABCN78_RS00105The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1804288
Simplified PFAM architecture for HKOC_1804288
PFAM domain coverage: 174 / 463 aa (37.6%)
1 aa463 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[242-306] | HATPase_c[353-461]
- Domain count: 2
- Matched identifier: HKOC_1804288
- Positioned domains: HisKA 242-306 ; HATPase_c 353-461
Cluster members and taxonomy
Representative gene: GCF_038755115#ABCN78_RS00105
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_038755115
AssemblyASM3875511v1 · Contighaploid
Genome composition3 987 928 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 104 · HK 51 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key