1 HisKA#1
121-187 aa · 67 aa · 19.5% of protein
Raw token
HisKA:121:0.000000000143:187:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABCN78_RS06535
Histidine kinase, Classic
Clostridioides difficile · GCF_038755115
ClassHKTypeClassicLength343 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_038755115#ABCN78_RS06535Stable P2CS identifier used across views.
GenomeGCF_038755115Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length343 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 343 aa (48.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa343 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
239-338 aa · 100 aa · 29.2% of protein
Raw token
HATPase_c:239:2.58e-26:338:101:109- Raw architecture: HisKA:121:0.000000000143:187:67:64#HATPase_c:239:2.58e-26:338:101:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_038755115::NZ_JBBBMI010000005.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span108414-110107Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_038755115::NZ_JBBBMI010000005.1::G00017Context members
ABCN78_RS06530ABCN78_RS06535
Partner locus tags
ABCN78_RS06530ABCN78_RS06535
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_077744926.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABCN78_RS06535Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBBBMI010000005.1Sequence record reported by the local genomic context database.
Genomic interval109 076-110 107 nt1 032 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span108 414-110 107 ntGCF_038755115::NZ_JBBBMI010000005.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_038755115::NZ_JBBBMI010000005.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBBBMI010000005.1All displayed genes belong to this local TCS context.
Neighborhood span108 414-110 107 nt1 694 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
108 414 nt110 107 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ABCN78_RS06530GCF_038755115#ABCN78_RS06530
RROmpR
108 414-109 079 nt · Forward (+)
ABCN78_RS06535GCF_038755115#ABCN78_RS06535
HKClassicCurrent focus
109 076-110 107 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002303425#BGU60_RS02100Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2828606
Simplified PFAM architecture for HKOC_2828606
PFAM domain coverage: 166 / 343 aa (48.4%)
1 aa343 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[123-187] | HATPase_c[238-338]
- Domain count: 2
- Matched identifier: HKOC_2828606
- Positioned domains: HisKA 123-187 ; HATPase_c 238-338
Cluster members and taxonomy
Representative gene: GCF_002303425#BGU60_RS02100
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_038755115
AssemblyASM3875511v1 · Contighaploid
Genome composition3 987 928 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 104 · HK 51 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key