1 sCache_like#1
15-112 aa · 98 aa · 22.3% of protein
Raw token
sCache_like:15:0.0000929:112:115:114P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABCQ27_RS16630
Histidine kinase, Classic
Clostridioides difficile · GCF_038753785
ClassHKTypeClassicLength440 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_038753785#ABCQ27_RS16630Stable P2CS identifier used across views.
GenomeGCF_038753785Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
sCache_likeHAMPHisKAHATPase_c
Protein length440 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage349 / 440 aa (79.3%)Merged over positioned domains only.
Domain description1 sCache_like,1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa440 aa
Domain-by-domain annotation4 items
2 HAMP#2
127-204 aa · 78 aa · 17.7% of protein
Raw token
HAMP:127:0.00000000539:204:78:693 HisKA#3
216-281 aa · 66 aa · 15.0% of protein
Raw token
HisKA:216:0.00000000555:281:66:644 HATPase_c#4
331-437 aa · 107 aa · 24.3% of protein
Raw token
HATPase_c:331:1.24e-26:437:107:109- Raw architecture: sCache_like:15:0.0000929:112:115:114#HAMP:127:0.00000000539:204:78:69#HisKA:216:0.00000000555:281:66:64#HATPase_c:331:1.24e-26:437:107:109
- Domain description: 1 sCache_like,1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_038753785::NZ_JBBBLG010000015.1::G00047
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span76771-78906Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_038753785::NZ_JBBBLG010000015.1::G00047Context members
ABCQ27_RS16625ABCQ27_RS16630
Partner locus tags
ABCQ27_RS16625ABCQ27_RS16630
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_330396043.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABCQ27_RS16630Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBBBLG010000015.1Sequence record reported by the local genomic context database.
Genomic interval77 584-78 906 nt1 323 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span76 771-78 906 ntGCF_038753785::NZ_JBBBLG010000015.1::G00047
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_038753785::NZ_JBBBLG010000015.1::G00047Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBBBLG010000015.1All displayed genes belong to this local TCS context.
Neighborhood span76 771-78 906 nt2 136 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
76 771 nt78 906 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ABCQ27_RS16625GCF_038753785#ABCQ27_RS16625
RROmpR
76 771-77 463 nt · Forward (+)
ABCQ27_RS16630GCF_038753785#ABCQ27_RS16630
HKClassicCurrent focus
77 584-78 906 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_036698195#LFB00_RS09345Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2078950
Simplified PFAM architecture for HKOC_2078950
PFAM domain coverage: 222 / 440 aa (50.5%)
1 aa440 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[154-204] | HisKA[217-280] | HATPase_c[331-437]
- Domain count: 3
- Matched identifier: HKOC_2078950
- Positioned domains: HAMP 154-204 ; HisKA 217-280 ; HATPase_c 331-437
Cluster members and taxonomy
Representative gene: GCF_036698195#LFB00_RS09345
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_038753785
AssemblyASM3875378v1 · Scaffoldhaploid
Genome composition4 495 809 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 103 · HK 48 · RR 54CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key