1 Response_reg#1
4-112 aa · 109 aa · 48.9% of protein
Raw token
Response_reg:4:1.53e-25:112:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABCQ27_RS01225
Response regulator OmpR family
Clostridioides difficile · GCF_038753785
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_038753785#ABCQ27_RS01225Stable P2CS identifier used across views.
GenomeGCF_038753785Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 223 aa (82.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-220 aa · 74 aa · 33.2% of protein
Raw token
Trans_reg_C:147:1.07e-28:220:75:77- Raw architecture: Response_reg:4:1.53e-25:112:110:111#Trans_reg_C:147:1.07e-28:220:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_038753785::NZ_JBBBLG010000001.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span301347-303022Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_038753785::NZ_JBBBLG010000001.1::G00004Context members
ABCQ27_RS01220ABCQ27_RS01225
Partner locus tags
ABCQ27_RS01220ABCQ27_RS01225
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_021367068.1Primary protein accession used for annex mappings.
UniProt accessionA0A069AKN3Primary UniProt accession resolved in the annex database.
UniProt IDA0A069AKN3_CLODIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABCQ27_RS01225Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBBBLG010000001.1Sequence record reported by the local genomic context database.
Genomic interval302 351-303 022 nt672 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span301 347-303 022 ntGCF_038753785::NZ_JBBBLG010000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_038753785::NZ_JBBBLG010000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBBBLG010000001.1All displayed genes belong to this local TCS context.
Neighborhood span301 347-303 022 nt1 676 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
301 347 nt303 022 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ABCQ27_RS01220GCF_038753785#ABCQ27_RS01220
HKClassic
301 347-302 354 nt · Reverse (-)
ABCQ27_RS01225GCF_038753785#ABCQ27_RS01225
RROmpRCurrent focus
302 351-303 022 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000235905#HMPREF9945_RS03215Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1588062
Simplified PFAM architecture for RROC_1588062
PFAM domain coverage: 183 / 223 aa (82.1%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[148-221]
- Domain count: 2
- Matched identifier: RROC_1588062
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 148-221 ; Trans_reg_C 148-221
Cluster members and taxonomy
Representative gene: GCF_000235905#HMPREF9945_RS03215
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_038753785
AssemblyASM3875378v1 · Scaffoldhaploid
Genome composition4 495 809 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 103 · HK 48 · RR 54CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key