1 Response_reg#1
4-112 aa · 109 aa · 49.3% of protein
Raw token
Response_reg:4:3.4e-31:112:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABCQ58_RS08595
Response regulator OmpR family
Clostridioides difficile · GCF_038752205
ClassRRTypeOmpRLength221 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_038752205#ABCQ58_RS08595Stable P2CS identifier used across views.
GenomeGCF_038752205Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length221 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 221 aa (83.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa221 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
144-219 aa · 76 aa · 34.4% of protein
Raw token
Trans_reg_C:144:4.42e-32:219:78:77- Raw architecture: Response_reg:4:3.4e-31:112:110:111#Trans_reg_C:144:4.42e-32:219:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_038752205::NZ_JBBBKA010000003.1::G00030
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span346844-348528Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_038752205::NZ_JBBBKA010000003.1::G00030Context members
ABCQ58_RS08590ABCQ58_RS08595
Partner locus tags
ABCQ58_RS08590ABCQ58_RS08595
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_343100817.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABCQ58_RS08595Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBBBKA010000003.1Sequence record reported by the local genomic context database.
Genomic interval347 863-348 528 nt666 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span346 844-348 528 ntGCF_038752205::NZ_JBBBKA010000003.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_038752205::NZ_JBBBKA010000003.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBBBKA010000003.1All displayed genes belong to this local TCS context.
Neighborhood span346 844-348 528 nt1 685 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
346 844 nt348 528 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ABCQ58_RS08590GCF_038752205#ABCQ58_RS08590
HKClassic
346 844-347 860 nt · Reverse (-)
ABCQ58_RS08595GCF_038752205#ABCQ58_RS08595
RROmpRCurrent focus
347 863-348 528 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_038752205#ABCQ58_RS08595The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1707073
Simplified PFAM architecture for RROC_1707073
PFAM domain coverage: 185 / 221 aa (83.7%)
1 aa221 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[144-219]
- Domain count: 2
- Matched identifier: RROC_1707073
- Positioned domains: Response_reg 4-112 ; Trans_reg_C 144-219
Cluster members and taxonomy
Representative gene: GCF_038752205#ABCQ58_RS08595
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_038752205
AssemblyASM3875220v1 · Scaffoldhaploid
Genome composition4 287 481 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 103 · HK 49 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key