1 PocR#1
7-75 aa · 69 aa · 11.6% of protein
Raw token
PocR:7:0.00000315:75:102:162P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MKX77_RS07590
Histidine kinase, Classic
Bacillus sp. FSL R9-9410 · GCF_038050385
ClassHKTypeClassicLength596 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_038050385#MKX77_RS07590Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
PocRPASPAS_4HisKAHATPase_c
Protein length596 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage444 / 596 aa (74.5%)Merged over positioned domains only.
Domain description1 PocR,1 PAS,1 PAS_4,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa596 aa
Domain-by-domain annotation5 items
2 PAS#2
129-234 aa · 106 aa · 17.8% of protein
Raw token
PAS:129:0.000000000526:234:111:1133 PAS_4#3
255-357 aa · 103 aa · 17.3% of protein
Raw token
PAS_4:255:0.000000000000149:357:108:1104 HisKA#4
372-434 aa · 63 aa · 10.6% of protein
Raw token
HisKA:372:0.000000000000787:434:63:645 HATPase_c#5
479-581 aa · 103 aa · 17.3% of protein
Raw token
HATPase_c:479:8.14e-25:581:106:109- Raw architecture: PocR:7:0.00000315:75:102:162#PAS:129:0.000000000526:234:111:113#PAS_4:255:0.000000000000149:357:108:110#HisKA:372:0.000000000000787:434:63:64#HATPase_c:479:8.14e-25:581:106:109
- Domain description: 1 PocR,1 PAS,1 PAS_4,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_038050385::NZ_JBBOTV010000001.1::G00013
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1430015-1431805Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMKX77_07590RefSeq proteinWP_341306208.1
Context group ID
GCF_038050385::NZ_JBBOTV010000001.1::G00013Context members
MKX77_RS07590
Partner locus tags
MKX77_RS07590
Partner old locus tags
MKX77_07590
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_341306208.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMKX77_RS07590Primary locus identifier stored in the genes table.
Old locus tagMKX77_07590Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBBOTV010000001.1Sequence record reported by the local genomic context database.
Genomic interval1 430 015-1 431 805 nt1 791 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 430 015-1 431 805 ntGCF_038050385::NZ_JBBOTV010000001.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_038050385::NZ_JBBOTV010000001.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBBOTV010000001.1All displayed genes belong to this local TCS context.
Neighborhood span1 430 015-1 431 805 nt1 791 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 430 015 nt1 431 805 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
MKX77_RS07590GCF_038050385#MKX77_RS07590
HKClassicCurrent focus
1 430 015-1 431 805 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_038050385#MKX77_RS07590The current gene is the representative for this cluster.
PFAM architecturePAS + PAS_4 + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1078437
Simplified PFAM architecture for HKOC_1078437
PFAM domain coverage: 342 / 596 aa (57.4%)
1 aa596 aa
PASPAS_4HisKAHATPase_c
- Simplified architecture: PAS + PAS_4 + HisKA + HATPase_c
- Raw architecture: PAS[130-203] | PAS_4[255-357] | HisKA[373-433] | HATPase_c[479-582]
- Domain count: 4
- Matched identifier: HKOC_1078437
- Positioned domains: PAS 130-203 ; PAS_4 255-357 ; HisKA 373-433 ; HATPase_c 479-582
Cluster members and taxonomy
Representative gene: GCF_038050385#MKX77_RS07590
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 921 590 · GCF_038050385
AssemblyASM3805038v1 · Contighaploid
Genome composition5 963 656 bp · 35,5% GCBacillus sp. FSL R9-9410
Signal transduction countsGenes 119 · HK 66 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key