1 Response_reg#1
5-114 aa · 110 aa · 48.0% of protein
Raw token
Response_reg:5:7.15e-35:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NSS74_RS00345
Response regulator OmpR family
Bacillus sp. FSL E2-8868 · GCF_038005505
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_038005505#NSS74_RS00345Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 229 aa (79.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-225 aa · 71 aa · 31.0% of protein
Raw token
Trans_reg_C:155:5.43e-29:225:74:77- Raw architecture: Response_reg:5:7.15e-35:114:111:111#Trans_reg_C:155:5.43e-29:225:74:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_038005505::NZ_JBBOTI010000001.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span60506-63045Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNSS74_00345RefSeq proteinWP_340813081.1
Context group ID
GCF_038005505::NZ_JBBOTI010000001.1::G00003Context members
NSS74_RS00345NSS74_RS00350
Partner locus tags
NSS74_RS00345NSS74_RS00350
Partner old locus tags
NSS74_00345NSS74_00350
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_340813081.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNSS74_RS00345Primary locus identifier stored in the genes table.
Old locus tagNSS74_00345Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBBOTI010000001.1Sequence record reported by the local genomic context database.
Genomic interval60 506-61 195 nt690 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span60 506-63 045 ntGCF_038005505::NZ_JBBOTI010000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_038005505::NZ_JBBOTI010000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBBOTI010000001.1All displayed genes belong to this local TCS context.
Neighborhood span60 506-63 045 nt2 540 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
60 506 nt63 045 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NSS74_RS00345GCF_038005505#NSS74_RS00345
RROmpRCurrent focus
60 506-61 195 nt · Forward (+)
NSS74_RS00350GCF_038005505#NSS74_RS00350
HKClassic
61 192-63 045 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_038005505#NSS74_RS00345The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1286356
Simplified PFAM architecture for RROC_1286356
PFAM domain coverage: 181 / 229 aa (79.0%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[154-225]
- Domain count: 2
- Matched identifier: RROC_1286356
- Positioned domains: Response_reg 5-113 ; Trans_reg_C 154-225
Cluster members and taxonomy
Representative gene: GCF_038005505#NSS74_RS00345
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 954 598 · GCF_038005505
AssemblyASM3800550v1 · Contighaploid
Genome composition5 482 904 bp · 35,5% GCBacillus sp. FSL E2-8868
Signal transduction countsGenes 121 · HK 65 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key