1 Response_reg#1
14-122 aa · 109 aa · 47.2% of protein
Raw token
Response_reg:14:2.88e-24:122:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
WIR59_RS06245
Response regulator OmpR family
Clostridioides difficile · GCF_037915725
ClassRRTypeOmpRLength231 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_037915725#WIR59_RS06245Stable P2CS identifier used across views.
GenomeGCF_037915725Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length231 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 231 aa (77.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa231 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
156-226 aa · 71 aa · 30.7% of protein
Raw token
Trans_reg_C:156:3.3e-28:226:76:77- Raw architecture: Response_reg:14:2.88e-24:122:110:111#Trans_reg_C:156:3.3e-28:226:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_037915725::NZ_CP149661.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1444727-1446555Genomic interval covered by the local TCS group.
Identifiers
Old locus tagWIR59_06245RefSeq proteinWP_005427029.1
Context group ID
GCF_037915725::NZ_CP149661.1::G00017Context members
WIR59_RS06245WIR59_RS06250
Partner locus tags
WIR59_RS06245WIR59_RS06250
Partner old locus tags
WIR59_06245WIR59_06250
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_005427029.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagWIR59_RS06245Primary locus identifier stored in the genes table.
Old locus tagWIR59_06245Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP149661.1Sequence record reported by the local genomic context database.
Genomic interval1 444 727-1 445 422 nt696 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 444 727-1 446 555 ntGCF_037915725::NZ_CP149661.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_037915725::NZ_CP149661.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP149661.1All displayed genes belong to this local TCS context.
Neighborhood span1 444 727-1 446 555 nt1 829 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 444 727 nt1 446 555 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
WIR59_RS06245GCF_037915725#WIR59_RS06245
RROmpRCurrent focus
1 444 727-1 445 422 nt · Forward (+)
WIR59_RS06250GCF_037915725#WIR59_RS06250
HKClassic
1 445 419-1 446 555 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_037915725#WIR59_RS06245The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1187295
Simplified PFAM architecture for RROC_1187295
PFAM domain coverage: 178 / 231 aa (77.1%)
1 aa231 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[14-122] | Trans_reg_C[158-226]
- Domain count: 2
- Matched identifier: RROC_1187295
- Positioned domains: Response_reg 14-122 ; Trans_reg_C 158-226
Cluster members and taxonomy
Representative gene: GCF_037915725#WIR59_RS06245
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_037915725
AssemblyASM3791572v1 · Complete Genomehaploid
Genome composition4 065 075 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 99 · HK 48 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key