1 HAMP#1
252-320 aa · 69 aa · 10.8% of protein
Raw token
HAMP:252:9.63e-16:320:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
V6B37_RS04140
Histidine kinase, Classic
Bifidobacterium breve · GCF_036872545
ClassHKTypeClassicLength641 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_036872545#V6B37_RS04140Stable P2CS identifier used across views.
GenomeGCF_036872545Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length641 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage287 / 641 aa (44.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa641 aa
Domain-by-domain annotation3 items
2 HisKA#2
332-401 aa · 70 aa · 10.9% of protein
Raw token
HisKA:332:7.51e-18:401:70:643 HATPase_c#3
465-612 aa · 148 aa · 23.1% of protein
Raw token
HATPase_c:465:3.85e-21:612:148:109- Raw architecture: HAMP:252:9.63e-16:320:69:69#HisKA:332:7.51e-18:401:70:64#HATPase_c:465:3.85e-21:612:148:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_036872545::NZ_CP145536.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1000612-1003345Genomic interval covered by the local TCS group.
Identifiers
Old locus tagV6B37_04140RefSeq proteinWP_338515622.1
Context group ID
GCF_036872545::NZ_CP145536.1::G00004Context members
V6B37_RS04135V6B37_RS04140
Partner locus tags
V6B37_RS04135V6B37_RS04140
Partner old locus tags
V6B37_04135V6B37_04140
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_338515622.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagV6B37_RS04140Primary locus identifier stored in the genes table.
Old locus tagV6B37_04140Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP145536.1Sequence record reported by the local genomic context database.
Genomic interval1 001 420-1 003 345 nt1 926 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 000 612-1 003 345 ntGCF_036872545::NZ_CP145536.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036872545::NZ_CP145536.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP145536.1All displayed genes belong to this local TCS context.
Neighborhood span1 000 612-1 003 345 nt2 734 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 000 612 nt1 003 345 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
V6B37_RS04135GCF_036872545#V6B37_RS04135
RROmpR
1 000 612-1 001 343 nt · Forward (+)
V6B37_RS04140GCF_036872545#V6B37_RS04140
HKClassicCurrent focus
1 001 420-1 003 345 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_036872545#V6B37_RS04140The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0920442
Simplified PFAM architecture for HKOC_0920442
PFAM domain coverage: 268 / 641 aa (41.8%)
1 aa641 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[269-320] | HisKA[333-401] | HATPase_c[465-611]
- Domain count: 3
- Matched identifier: HKOC_0920442
- Positioned domains: HAMP 269-320 ; HisKA 333-401 ; HATPase_c 465-611
Cluster members and taxonomy
Representative gene: GCF_036872545#V6B37_RS04140
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 685 · GCF_036872545
AssemblyASM3687254v1 · Complete Genomehaploid
Genome composition2 460 420 bp · 59,0% GCBifidobacterium breve
Signal transduction countsGenes 23 · HK 9 · RR 12CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key