1 Response_reg#1
4-113 aa · 110 aa · 43.0% of protein
Raw token
Response_reg:4:1.26e-27:113:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LFB29_RS00590
Response regulator LytTR family
Clostridioides difficile · GCF_036698515
ClassRRTypeLytTRLength256 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_036698515#LFB29_RS00590Stable P2CS identifier used across views.
GenomeGCF_036698515Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length256 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage208 / 256 aa (81.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 LytTR#2
157-254 aa · 98 aa · 38.3% of protein
Raw token
LytTR:157:9.51e-31:254:98:98- Raw architecture: Response_reg:4:1.26e-27:113:112:111#LytTR:157:9.51e-31:254:98:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_036698515::NZ_JAJBXN010000001.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span138170-140147Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_036698515::NZ_JAJBXN010000001.1::G00003Context members
LFB29_RS00585LFB29_RS00590
Partner locus tags
LFB29_RS00585LFB29_RS00590
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_332968211.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLFB29_RS00590Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAJBXN010000001.1Sequence record reported by the local genomic context database.
Genomic interval139 377-140 147 nt771 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span138 170-140 147 ntGCF_036698515::NZ_JAJBXN010000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036698515::NZ_JAJBXN010000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBXN010000001.1All displayed genes belong to this local TCS context.
Neighborhood span138 170-140 147 nt1 978 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
138 170 nt140 147 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LFB29_RS00585GCF_036698515#LFB29_RS00585
HKClassic
138 170-139 372 nt · Forward (+)
LFB29_RS00590GCF_036698515#LFB29_RS00590
RRLytTRCurrent focus
139 377-140 147 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_036698515#LFB29_RS00590The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0677888
Simplified PFAM architecture for RROC_0677888
PFAM domain coverage: 206 / 256 aa (80.5%)
1 aa256 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-112] | LytTR[157-253]
- Domain count: 2
- Matched identifier: RROC_0677888
- Positioned domains: Response_reg 4-112 ; LytTR 157-253
Cluster members and taxonomy
Representative gene: GCF_036698515#LFB29_RS00590
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_036698515
AssemblyASM3669851v1 · Contighaploid
Genome composition4 214 507 bp · 28,0% GCClostridioides difficile
Signal transduction countsGenes 94 · HK 45 · RR 49CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key