1 Hpt#1
3-106 aa · 104 aa · 14.9% of protein
Raw token
Hpt:3:0.0000000000000106:106:104:84P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LFB00_RS09035
Histidine kinase, CheA
Clostridioides difficile · GCF_036698195
ClassHKTypeCheALength699 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_036698195#LFB00_RS09035Stable P2CS identifier used across views.
GenomeGCF_036698195Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HptH-kinase_dimHATPase_cCheW
Protein length699 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage441 / 699 aa (63.1%)Merged over positioned domains only.
Domain description1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheWSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa699 aa
Domain-by-domain annotation4 items
2 H-kinase_dim#2
311-372 aa · 62 aa · 8.9% of protein
Raw token
H-kinase_dim:311:0.00000000000000454:372:67:673 HATPase_c#3
419-558 aa · 140 aa · 20.0% of protein
Raw token
HATPase_c:419:1.66e-17:558:140:1094 CheW#4
563-697 aa · 135 aa · 19.3% of protein
Raw token
CheW:563:1.87e-22:697:136:138- Raw architecture: Hpt:3:0.0000000000000106:106:104:84#H-kinase_dim:311:0.00000000000000454:372:67:67#HATPase_c:419:1.66e-17:558:140:109#CheW:563:1.87e-22:697:136:138
- Domain description: 1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheW
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_036698195::NZ_JAJBXC010000016.1::G00015
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span32375-34474Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_036698195::NZ_JAJBXC010000016.1::G00015Context members
LFB00_RS09035
Partner locus tags
LFB00_RS09035
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_043897182.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLFB00_RS09035Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAJBXC010000016.1Sequence record reported by the local genomic context database.
Genomic interval32 375-34 474 nt2 100 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span32 375-34 474 ntGCF_036698195::NZ_JAJBXC010000016.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036698195::NZ_JAJBXC010000016.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBXC010000016.1All displayed genes belong to this local TCS context.
Neighborhood span32 375-34 474 nt2 100 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
32 375 nt34 474 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LFB00_RS09035GCF_036698195#LFB00_RS09035
HKCheACurrent focus
32 375-34 474 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_036698195#LFB00_RS09035The current gene is the representative for this cluster.
PFAM architectureHpt + P2 + H-kinase_dim + HATPase_c + CheW5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0772643
Simplified PFAM architecture for HKOC_0772643
PFAM domain coverage: 513 / 699 aa (73.4%)
1 aa699 aa
HptP2H-kinase_dimHATPase_cCheW
- Simplified architecture: Hpt + P2 + H-kinase_dim + HATPase_c + CheW
- Raw architecture: Hpt[3-104] | P2[164-240] | H-kinase_dim[311-372] | HATPase_c[421-558] | CheW[564-697]
- Domain count: 5
- Matched identifier: HKOC_0772643
- Positioned domains: Hpt 3-104 ; P2 164-240 ; H-kinase_dim 311-372 ; HATPase_c 421-558 ; CheW 564-697
Cluster members and taxonomy
Representative gene: GCF_036698195#LFB00_RS09035
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_036698195
AssemblyASM3669819v1 · Contighaploid
Genome composition4 403 360 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 101 · HK 46 · RR 53CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key