1 Response_reg#1
4-110 aa · 107 aa · 45.9% of protein
Raw token
Response_reg:4:9.45e-19:110:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LFA86_RS07210
Response regulator LytTR family
Clostridioides difficile · GCF_036698175
ClassRRTypeLytTRLength233 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_036698175#LFA86_RS07210Stable P2CS identifier used across views.
GenomeGCF_036698175Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage198 / 233 aa (85.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa233 aa
Domain-by-domain annotation2 items
2 LytTR#2
135-225 aa · 91 aa · 39.1% of protein
Raw token
LytTR:135:3.13e-22:225:97:98- Raw architecture: Response_reg:4:9.45e-19:110:110:111#LytTR:135:3.13e-22:225:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_036698175::NZ_JAJBXB010000006.1::G00048
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span188892-189593Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_036698175::NZ_JAJBXB010000006.1::G00048Context members
LFA86_RS07210
Partner locus tags
LFA86_RS07210
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_231311148.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLFA86_RS07210Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAJBXB010000006.1Sequence record reported by the local genomic context database.
Genomic interval188 892-189 593 nt702 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span188 892-189 593 ntGCF_036698175::NZ_JAJBXB010000006.1::G00048
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036698175::NZ_JAJBXB010000006.1::G00048Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBXB010000006.1All displayed genes belong to this local TCS context.
Neighborhood span188 892-189 593 nt702 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
188 892 nt189 593 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LFA86_RS07210GCF_036698175#LFA86_RS07210
RRLytTRCurrent focus
188 892-189 593 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_036698175#LFA86_RS07210The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1107738
Simplified PFAM architecture for RROC_1107738
PFAM domain coverage: 197 / 233 aa (84.5%)
1 aa233 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[5-111] | LytTR[136-225]
- Domain count: 2
- Matched identifier: RROC_1107738
- Positioned domains: Response_reg 5-111 ; LytTR 136-225
Cluster members and taxonomy
Representative gene: GCF_036698175#LFA86_RS07210
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_036698175
AssemblyASM3669817v1 · Contighaploid
Genome composition4 198 386 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 103 · HK 50 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key