1 Response_reg#1
5-117 aa · 113 aa · 49.3% of protein
Raw token
Response_reg:5:0.00000000000000227:117:119:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
V3C66_RS10425
Response regulator LytTR family
Catenibacterium tridentinum · GCF_036321925
ClassRRTypeLytTRLength229 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_036321925#V3C66_RS10425Stable P2CS identifier used across views.
GenomeGCF_036321925Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Catenibacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage203 / 229 aa (88.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 LytTR#2
136-225 aa · 90 aa · 39.3% of protein
Raw token
LytTR:136:0.00000000000000258:225:95:98- Raw architecture: Response_reg:5:0.00000000000000227:117:119:111#LytTR:136:0.00000000000000258:225:95:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_036321925::NZ_JAWQEC010000046.1::G00015
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span10674-11363Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_036321925::NZ_JAWQEC010000046.1::G00015Context members
V3C66_RS10425
Partner locus tags
V3C66_RS10425
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_288208962.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagV3C66_RS10425Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWQEC010000046.1Sequence record reported by the local genomic context database.
Genomic interval10 674-11 363 nt690 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span10 674-11 363 ntGCF_036321925::NZ_JAWQEC010000046.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036321925::NZ_JAWQEC010000046.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWQEC010000046.1All displayed genes belong to this local TCS context.
Neighborhood span10 674-11 363 nt690 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
10 674 nt11 363 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
V3C66_RS10425GCF_036321925#V3C66_RS10425
RRLytTRCurrent focus
10 674-11 363 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_036321925#V3C66_RS10425The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1285071
Simplified PFAM architecture for RROC_1285071
PFAM domain coverage: 188 / 229 aa (82.1%)
1 aa229 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[5-104] | LytTR[136-223]
- Domain count: 2
- Matched identifier: RROC_1285071
- Positioned domains: Response_reg 5-104 ; LytTR 136-223
Cluster members and taxonomy
Representative gene: GCF_036321925#V3C66_RS10425
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 3 035 606 · GCF_036321925
AssemblyASM3632192v1 · Contighaploid
Genome composition2 542 234 bp · 34,5% GCCatenibacterium tridentinum
Signal transduction countsGenes 30 · HK 12 · RR 17CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusCatenibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Catenibacterium
Related genes
Preview from the same derived genome key