1 HisKA_3#1
177-244 aa · 68 aa · 18.6% of protein
Raw token
HisKA_3:177:1.38e-19:244:68:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
Q3V31_RS02495
Histidine kinase, Classic
Bacillus nitratireducens · GCF_036320425
ClassHKTypeClassicLength366 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_036320425#Q3V31_RS02495Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length366 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage145 / 366 aa (39.6%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa366 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
289-365 aa · 77 aa · 21.0% of protein
Raw token
HATPase_c:289:0.0000000000824:365:97:109- Raw architecture: HisKA_3:177:1.38e-19:244:68:68#HATPase_c:289:0.0000000000824:365:97:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_036320425::NZ_JAUMJO010000001.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span481366-483109Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_036320425::NZ_JAUMJO010000001.1::G00007Context members
Q3V31_RS02495Q3V31_RS02500
Partner locus tags
Q3V31_RS02495Q3V31_RS02500
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_329762069.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQ3V31_RS02495Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAUMJO010000001.1Sequence record reported by the local genomic context database.
Genomic interval481 366-482 466 nt1 101 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span481 366-483 109 ntGCF_036320425::NZ_JAUMJO010000001.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036320425::NZ_JAUMJO010000001.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAUMJO010000001.1All displayed genes belong to this local TCS context.
Neighborhood span481 366-483 109 nt1 744 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
481 366 nt483 109 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
Q3V31_RS02495GCF_036320425#Q3V31_RS02495
HKClassicCurrent focus
481 366-482 466 nt · Reverse (-)
Q3V31_RS02500GCF_036320425#Q3V31_RS02500
RRNarL
482 471-483 109 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_036320425#Q3V31_RS02495The current gene is the representative for this cluster.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2716440
Simplified PFAM architecture for HKOC_2716440
PFAM domain coverage: 144 / 366 aa (39.3%)
1 aa366 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[177-243] | HATPase_c[289-365]
- Domain count: 2
- Matched identifier: HKOC_2716440
- Positioned domains: HisKA_3 177-243 ; HATPase_c 289-365
Cluster members and taxonomy
Representative gene: GCF_036320425#Q3V31_RS02495
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 026 193 · GCF_036320425
AssemblyASM3632042v1 · Scaffoldreference genome · haploid
Genome composition5 933 421 bp · 35,0% GCBacillus nitratireducens
Signal transduction countsGenes 132 · HK 71 · RR 61CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key