1 HAMP#1
51-129 aa · 79 aa · 22.1% of protein
Raw token
HAMP:51:0.0000000122:129:79:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
Q3V31_RS01660
Histidine kinase, Classic
Bacillus nitratireducens · GCF_036320425
ClassHKTypeClassicLength357 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_036320425#Q3V31_RS01660Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length357 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage255 / 357 aa (71.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa357 aa
Domain-by-domain annotation3 items
2 HisKA#2
134-199 aa · 66 aa · 18.5% of protein
Raw token
HisKA:134:0.000000000000183:199:66:643 HATPase_c#3
243-352 aa · 110 aa · 30.8% of protein
Raw token
HATPase_c:243:1.32e-32:352:110:109- Raw architecture: HAMP:51:0.0000000122:129:79:69#HisKA:134:0.000000000000183:199:66:64#HATPase_c:243:1.32e-32:352:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_036320425::NZ_JAUMJO010000001.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span304553-306300Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_036320425::NZ_JAUMJO010000001.1::G00004Context members
Q3V31_RS01660Q3V31_RS01665
Partner locus tags
Q3V31_RS01660Q3V31_RS01665
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_001231499.1Primary protein accession used for annex mappings.
UniProt accessionA0ABU6P8R5Primary UniProt accession resolved in the annex database.
UniProt IDA0ABU6P8R5_9BACIDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQ3V31_RS01660Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAUMJO010000001.1Sequence record reported by the local genomic context database.
Genomic interval304 553-305 626 nt1 074 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span304 553-306 300 ntGCF_036320425::NZ_JAUMJO010000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036320425::NZ_JAUMJO010000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAUMJO010000001.1All displayed genes belong to this local TCS context.
Neighborhood span304 553-306 300 nt1 748 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
304 553 nt306 300 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
Q3V31_RS01660GCF_036320425#Q3V31_RS01660
HKClassicCurrent focus
304 553-305 626 nt · Reverse (-)
Q3V31_RS01665GCF_036320425#Q3V31_RS01665
RROmpR
305 623-306 300 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_007676595#FS640_RS07550Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2766832
Simplified PFAM architecture for HKOC_2766832
PFAM domain coverage: 175 / 357 aa (49.0%)
1 aa357 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[134-198] | HATPase_c[244-353]
- Domain count: 2
- Matched identifier: HKOC_2766832
- Positioned domains: HisKA 134-198 ; HATPase_c 244-353
Cluster members and taxonomy
Representative gene: GCF_007676595#FS640_RS07550
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 026 193 · GCF_036320425
AssemblyASM3632042v1 · Scaffoldreference genome · haploid
Genome composition5 933 421 bp · 35,0% GCBacillus nitratireducens
Signal transduction countsGenes 132 · HK 71 · RR 61CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key