1 HAMP#1
155-219 aa · 65 aa · 14.2% of protein
Raw token
HAMP:155:0.00000000000184:219:65:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
V2453_RS07340
Histidine kinase, Classic
Catenibacterium tridentinum · GCF_036318385
ClassHKTypeClassicLength457 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_036318385#V2453_RS07340Stable P2CS identifier used across views.
GenomeGCF_036318385Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Catenibacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length457 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage241 / 457 aa (52.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa457 aa
Domain-by-domain annotation3 items
2 HisKA#2
226-291 aa · 66 aa · 14.4% of protein
Raw token
HisKA:226:0.0000000000000483:291:66:643 HATPase_c#3
337-446 aa · 110 aa · 24.1% of protein
Raw token
HATPase_c:337:1.07e-31:446:110:109- Raw architecture: HAMP:155:0.00000000000184:219:65:69#HisKA:226:0.0000000000000483:291:66:64#HATPase_c:337:1.07e-31:446:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_036318385::NZ_JAWQDU010000022.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span35723-37767Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_036318385::NZ_JAWQDU010000022.1::G00012Context members
V2453_RS07340V2453_RS07345
Partner locus tags
V2453_RS07340V2453_RS07345
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_288951201.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagV2453_RS07340Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWQDU010000022.1Sequence record reported by the local genomic context database.
Genomic interval35 723-37 096 nt1 374 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span35 723-37 767 ntGCF_036318385::NZ_JAWQDU010000022.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036318385::NZ_JAWQDU010000022.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWQDU010000022.1All displayed genes belong to this local TCS context.
Neighborhood span35 723-37 767 nt2 045 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
35 723 nt37 767 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
V2453_RS07340GCF_036318385#V2453_RS07340
HKClassicCurrent focus
35 723-37 096 nt · Reverse (-)
V2453_RS07345GCF_036318385#V2453_RS07345
RROmpR
37 096-37 767 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_036318385#V2453_RS07340The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1883839
Simplified PFAM architecture for HKOC_1883839
PFAM domain coverage: 222 / 457 aa (48.6%)
1 aa457 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[171-219] | HisKA[226-289] | HATPase_c[338-446]
- Domain count: 3
- Matched identifier: HKOC_1883839
- Positioned domains: HAMP 171-219 ; HisKA 226-289 ; HATPase_c 338-446
Cluster members and taxonomy
Representative gene: GCF_036318385#V2453_RS07340
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 3 035 606 · GCF_036318385
AssemblyASM3631838v1 · Contighaploid
Genome composition2 444 826 bp · 34,5% GCCatenibacterium tridentinum
Signal transduction countsGenes 34 · HK 14 · RR 20CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusCatenibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Catenibacterium
Related genes
Preview from the same derived genome key