1 Response_reg#1
46-152 aa · 107 aa · 41.0% of protein
Raw token
Response_reg:46:6.09e-30:152:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DV099_RS02560
Response regulator, AmiR_NasR family
Bifidobacterium longum · GCF_036281535
ClassRRTypeAmiR_NasRLength261 aaTM0ValidatedNoCompleteYesContextNo local context
Gene IDGCF_036281535#DV099_RS02560Stable P2CS identifier used across views.
External referencesNo external accessionRefSeq / UniProt / MIST4 links appear here when available.
Domain signature
Compact overview inferred from the domain field
Response_regANTAR
Protein length261 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage156 / 261 aa (59.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 ANTARSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa261 aa
Domain-by-domain annotation2 items
2 ANTAR#2
199-247 aa · 49 aa · 18.8% of protein
Raw token
ANTAR:199:3.54e-17:247:49:49- Raw architecture: Response_reg:46:6.09e-30:152:108:111#ANTAR:199:3.54e-17:247:49:49
- Domain description: 1 Response_reg,1 ANTAR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
No local TCS context mapping is available for this gene.
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No external UniProt / GO / PubMed mapping is available for this gene.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDV099_RS02560Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconUnavailableNo contig or replicon mapping is available for this gene.
Genomic intervalUnavailableNo start/end genomic coordinates are available for this gene.
StrandUnavailableStrand sign follows the local context database convention.
Local TCS group spanUnavailableNo grouped neighborhood span is available for this gene.
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
No local TCS neighborhood is available for this gene on this server.
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000196555#BLLJ_RS03255Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + ANTAR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0648487
Simplified PFAM architecture for RROC_0648487
PFAM domain coverage: 161 / 261 aa (61.7%)
1 aa261 aa
Response_regANTAR
- Simplified architecture: Response_reg + ANTAR
- Raw architecture: Response_reg[46-153] | ANTAR[195-247]
- Domain count: 2
- Matched identifier: RROC_0648487
- Positioned domains: Response_reg 46-153 ; Response_reg 46-153 ; ANTAR 195-247 ; ANTAR 195-247
Cluster members and taxonomy
Representative gene: GCF_000196555#BLLJ_RS03255
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 14 over 14 total members. Page 1 / 1.
GCF_000196555#BLLJ_RS03255 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID -1 · GCF_036281535
AssemblyNo assembly metadataRefSeq category and assembly type are unavailable
Genome compositionNo genome size or GC metadataBifidobacterium longum
Signal transduction countsGenes 19 · HK 10 · RR 9CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomNoneKingdomNonePhylumNoneClassNoneOrderNoneFamilyNoneGenusNone
Lineage path7 lineage nodes
1None2None3None4None5None6None7None
Related genes
Preview from the same derived genome key