1 Response_reg#1
11-124 aa · 114 aa · 49.4% of protein
Raw token
Response_reg:11:0.00000000000000188:124:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DV099_RS01610
Response regulator NarL family
Bifidobacterium longum · GCF_036281535
ClassRRTypeNarLLength231 aaTM0ValidatedNoCompleteYesContextNo local context
Gene IDGCF_036281535#DV099_RS01610Stable P2CS identifier used across views.
External referencesNo external accessionRefSeq / UniProt / MIST4 links appear here when available.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length231 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 231 aa (74.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa231 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
168-225 aa · 58 aa · 25.1% of protein
Raw token
HTH_LUXR:168:3.06e-26:225:58:58- Raw architecture: Response_reg:11:0.00000000000000188:124:114:111#HTH_LUXR:168:3.06e-26:225:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
No local TCS context mapping is available for this gene.
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No external UniProt / GO / PubMed mapping is available for this gene.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDV099_RS01610Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconUnavailableNo contig or replicon mapping is available for this gene.
Genomic intervalUnavailableNo start/end genomic coordinates are available for this gene.
StrandUnavailableStrand sign follows the local context database convention.
Local TCS group spanUnavailableNo grouped neighborhood span is available for this gene.
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
No local TCS neighborhood is available for this gene on this server.
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000185665#HMPREF0177_RS07090Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1120003
Simplified PFAM architecture for RROC_1120003
PFAM domain coverage: 169 / 232 aa (72.8%)
1 aa232 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[11-123] | GerE[170-225]
- Domain count: 2
- Matched identifier: RROC_1120003
- Positioned domains: Response_reg 11-123 ; Response_reg 11-123 ; GerE 170-225 ; GerE 170-225
Cluster members and taxonomy
Representative gene: GCF_000185665#HMPREF0177_RS07090
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID -1 · GCF_036281535
AssemblyNo assembly metadataRefSeq category and assembly type are unavailable
Genome compositionNo genome size or GC metadataBifidobacterium longum
Signal transduction countsGenes 19 · HK 10 · RR 9CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomNoneKingdomNonePhylumNoneClassNoneOrderNoneFamilyNoneGenusNone
Lineage path7 lineage nodes
1None2None3None4None5None6None7None
Related genes
Preview from the same derived genome key