1 HisKA_3#1
242-304 aa · 63 aa · 7.2% of protein
Raw token
HisKA_3:242:2.28e-18:304:63:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DV099_RS02230
Histidine kinase, Classic
Bifidobacterium longum · GCF_036281535
ClassHKTypeClassicLength869 aaTM0ValidatedNoCompleteYesContextNo local context
Gene IDGCF_036281535#DV099_RS02230Stable P2CS identifier used across views.
External referencesNo external accessionRefSeq / UniProt / MIST4 links appear here when available.
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length869 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage150 / 869 aa (17.3%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa869 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
353-439 aa · 87 aa · 10.0% of protein
Raw token
HATPase_c:353:0.000000000000121:439:104:109- Raw architecture: HisKA_3:242:2.28e-18:304:63:68#HATPase_c:353:0.000000000000121:439:104:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
No local TCS context mapping is available for this gene.
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No external UniProt / GO / PubMed mapping is available for this gene.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDV099_RS02230Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconUnavailableNo contig or replicon mapping is available for this gene.
Genomic intervalUnavailableNo start/end genomic coordinates are available for this gene.
StrandUnavailableStrand sign follows the local context database convention.
Local TCS group spanUnavailableNo grouped neighborhood span is available for this gene.
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
No local TCS neighborhood is available for this gene on this server.
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_036281535#DV099_RS02230The current gene is the representative for this cluster.
PFAM architectureDUF7134 + HisKA_3 + HATPase_c + DUF71344 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0460582
Simplified PFAM architecture for HKOC_0460582
PFAM domain coverage: 426 / 869 aa (49.0%)
1 aa869 aa
DUF7134HisKA_3HATPase_cDUF7134
- Simplified architecture: DUF7134 + HisKA_3 + HATPase_c + DUF7134
- Raw architecture: DUF7134[10-147] | HisKA_3[242-304] | HATPase_c[353-440] | DUF7134[554-690]
- Domain count: 4
- Matched identifier: HKOC_0460582
- Positioned domains: DUF7134 10-147 ; HisKA_3 242-304 ; HATPase_c 353-440 ; DUF7134 554-690
Cluster members and taxonomy
Representative gene: GCF_036281535#DV099_RS02230
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID -1 · GCF_036281535
AssemblyNo assembly metadataRefSeq category and assembly type are unavailable
Genome compositionNo genome size or GC metadataBifidobacterium longum
Signal transduction countsGenes 19 · HK 10 · RR 9CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomNoneKingdomNonePhylumNoneClassNoneOrderNoneFamilyNoneGenusNone
Lineage path7 lineage nodes
1None2None3None4None5None6None7None
Related genes
Preview from the same derived genome key