1 HAMP#1
171-241 aa · 71 aa · 15.1% of protein
Raw token
HAMP:171:0.000000000292:241:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P4U76_RS19620
Histidine kinase, Classic
Bacillus proteolyticus · GCF_036211985
ClassHKTypeClassicLength471 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_036211985#P4U76_RS19620Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length471 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 471 aa (52.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa471 aa
Domain-by-domain annotation3 items
2 HisKA#2
245-312 aa · 68 aa · 14.4% of protein
Raw token
HisKA:245:1.02e-16:312:68:643 HATPase_c#3
362-470 aa · 109 aa · 23.1% of protein
Raw token
HATPase_c:362:9.34e-29:470:109:109- Raw architecture: HAMP:171:0.000000000292:241:71:69#HisKA:245:1.02e-16:312:68:64#HATPase_c:362:9.34e-29:470:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_036211985::NZ_JARMCS010000010.1::G00042
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span509034-511120Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP4U76_19565RefSeq proteinWP_071746076.1
Context group ID
GCF_036211985::NZ_JARMCS010000010.1::G00042Context members
P4U76_RS19620P4U76_RS19625
Partner locus tags
P4U76_RS19620P4U76_RS19625
Partner old locus tags
P4U76_19565P4U76_19570
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_071746076.1Primary protein accession used for annex mappings.
UniProt accessionA0AA44KV80Primary UniProt accession resolved in the annex database.
UniProt IDA0AA44KV80_9BACIDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP4U76_RS19620Primary locus identifier stored in the genes table.
Old locus tagP4U76_19565Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARMCS010000010.1Sequence record reported by the local genomic context database.
Genomic interval509 034-510 449 nt1 416 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span509 034-511 120 ntGCF_036211985::NZ_JARMCS010000010.1::G00042
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036211985::NZ_JARMCS010000010.1::G00042Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARMCS010000010.1All displayed genes belong to this local TCS context.
Neighborhood span509 034-511 120 nt2 087 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
509 034 nt511 120 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
P4U76_RS19620GCF_036211985#P4U76_RS19620
HKClassicCurrent focus
509 034-510 449 nt · Reverse (-)
P4U76_RS19625GCF_036211985#P4U76_RS19625
RROmpR
510 446-511 120 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001884065#BAQ49_RS15645Use this link to inspect the representative gene detail.
PFAM architectureArlS_N + HAMP + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1708525
Simplified PFAM architecture for HKOC_1708525
PFAM domain coverage: 353 / 471 aa (74.9%)
1 aa471 aa
ArlS_NHAMPHisKAHATPase_c
- Simplified architecture: ArlS_N + HAMP + HisKA + HATPase_c
- Raw architecture: ArlS_N[42-165] | HAMP[188-240] | HisKA[246-312] | HATPase_c[361-469]
- Domain count: 4
- Matched identifier: HKOC_1708525
- Positioned domains: ArlS_N 42-165 ; HAMP 188-240 ; HisKA 246-312 ; HATPase_c 361-469
Cluster members and taxonomy
Representative gene: GCF_001884065#BAQ49_RS15645
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 026 192 · GCF_036211985
AssemblyASM3621198v1 · Scaffoldhaploid
Genome composition5 948 885 bp · 35,0% GCBacillus proteolyticus
Signal transduction countsGenes 126 · HK 68 · RR 57CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key