1 Response_reg#1
4-116 aa · 113 aa · 53.3% of protein
Raw token
Response_reg:4:1.05e-33:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P4U76_RS00375
Response regulator NarL family
Bacillus proteolyticus · GCF_036211985
ClassRRTypeNarLLength212 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_036211985#P4U76_RS00375Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length212 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 212 aa (79.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa212 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
149-203 aa · 55 aa · 25.9% of protein
Raw token
HTH_LUXR:149:1.41e-24:203:55:58- Raw architecture: Response_reg:4:1.05e-33:116:113:111#HTH_LUXR:149:1.41e-24:203:55:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_036211985::NZ_JARMCS010000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span71385-73857Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP4U76_00375RefSeq proteinWP_071771107.1
Context group ID
GCF_036211985::NZ_JARMCS010000001.1::G00001Context members
P4U76_RS00375P4U76_RS00380
Partner locus tags
P4U76_RS00375P4U76_RS00380
Partner old locus tags
P4U76_00375P4U76_00380
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_071771107.1Primary protein accession used for annex mappings.
UniProt accessionA0ABV3I5M7Primary UniProt accession resolved in the annex database.
UniProt IDA0ABV3I5M7_9BACIDisplay identifier provided by UniProt.
GO / PubMed0 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP4U76_RS00375Primary locus identifier stored in the genes table.
Old locus tagP4U76_00375Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARMCS010000001.1Sequence record reported by the local genomic context database.
Genomic interval71 385-72 023 nt639 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span71 385-73 857 ntGCF_036211985::NZ_JARMCS010000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036211985::NZ_JARMCS010000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARMCS010000001.1All displayed genes belong to this local TCS context.
Neighborhood span71 385-73 857 nt2 473 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
71 385 nt73 857 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
P4U76_RS00375GCF_036211985#P4U76_RS00375
RRNarLCurrent focus
71 385-72 023 nt · Reverse (-)
P4U76_RS00380GCF_036211985#P4U76_RS00380
HKClassic
71 998-73 857 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001884205#BAU27_RS13510Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1988866
Simplified PFAM architecture for RROC_1988866
PFAM domain coverage: 169 / 212 aa (79.7%)
1 aa212 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-116] | GerE[148-203]
- Domain count: 2
- Matched identifier: RROC_1988866
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; GerE 148-203 ; GerE 148-203
Cluster members and taxonomy
Representative gene: GCF_001884205#BAU27_RS13510
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 026 192 · GCF_036211985
AssemblyASM3621198v1 · Scaffoldhaploid
Genome composition5 948 885 bp · 35,0% GCBacillus proteolyticus
Signal transduction countsGenes 126 · HK 68 · RR 57CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key