1 Response_reg#1
4-113 aa · 110 aa · 47.6% of protein
Raw token
Response_reg:4:9.52e-28:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P4U46_RS03875
Response regulator OmpR family
Bacillus mycoides · GCF_036211445
ClassRRTypeOmpRLength231 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_036211445#P4U46_RS03875Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length231 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 231 aa (80.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-225 aa · 75 aa · 32.5% of protein
Raw token
Trans_reg_C:151:7.91e-25:225:76:77- Raw architecture: Response_reg:4:9.52e-28:113:111:111#Trans_reg_C:151:7.91e-25:225:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_036211445::NZ_JARMBR010000009.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span133371-135091Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP4U46_03865RefSeq proteinWP_243514078.1
Context group ID
GCF_036211445::NZ_JARMBR010000009.1::G00006Context members
P4U46_RS03875P4U46_RS03880
Partner locus tags
P4U46_RS03875P4U46_RS03880
Partner old locus tags
P4U46_03865P4U46_03870
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_243514078.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP4U46_RS03875Primary locus identifier stored in the genes table.
Old locus tagP4U46_03865Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARMBR010000009.1Sequence record reported by the local genomic context database.
Genomic interval133 371-134 066 nt696 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span133 371-135 091 ntGCF_036211445::NZ_JARMBR010000009.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036211445::NZ_JARMBR010000009.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARMBR010000009.1All displayed genes belong to this local TCS context.
Neighborhood span133 371-135 091 nt1 721 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
133 371 nt135 091 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
P4U46_RS03875GCF_036211445#P4U46_RS03875
RROmpRCurrent focus
133 371-134 066 nt · Forward (+)
P4U46_RS03880GCF_036211445#P4U46_RS03880
HKClassic
134 069-135 091 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_022814785#MN034_RS23460Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1179574
Simplified PFAM architecture for RROC_1179574
PFAM domain coverage: 184 / 231 aa (79.7%)
1 aa231 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[151-225]
- Domain count: 2
- Matched identifier: RROC_1179574
- Positioned domains: Response_reg 4-112 ; Trans_reg_C 151-225
Cluster members and taxonomy
Representative gene: GCF_022814785#MN034_RS23460
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_036211445
AssemblyASM3621144v1 · Scaffoldhaploid
Genome composition5 855 952 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 135 · HK 72 · RR 63CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key