1 HAMP#1
319-386 aa · 68 aa · 10.9% of protein
Raw token
HAMP:319:0.0000000000000631:386:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P4U46_RS03755
Histidine kinase, Classic
Bacillus mycoides · GCF_036211445
ClassHKTypeClassicLength625 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_036211445#P4U46_RS03755Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length625 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage244 / 625 aa (39.0%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HisKA#2
406-470 aa · 65 aa · 10.4% of protein
Raw token
HisKA:406:0.0000000000000172:470:65:643 HATPase_c#3
514-624 aa · 111 aa · 17.8% of protein
Raw token
HATPase_c:514:2.12e-23:624:112:109- Raw architecture: HAMP:319:0.0000000000000631:386:68:69#HisKA:406:0.0000000000000172:470:65:64#HATPase_c:514:2.12e-23:624:112:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_036211445::NZ_JARMBR010000009.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span113549-116112Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP4U46_03745RefSeq proteinWP_087962819.1
Context group ID
GCF_036211445::NZ_JARMBR010000009.1::G00005Context members
P4U46_RS03755P4U46_RS03760
Partner locus tags
P4U46_RS03755P4U46_RS03760
Partner old locus tags
P4U46_03745P4U46_03750
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_087962819.1Primary protein accession used for annex mappings.
UniProt accessionA0AAP8BFM7Primary UniProt accession resolved in the annex database.
UniProt IDA0AAP8BFM7_BACMYDisplay identifier provided by UniProt.
GO / PubMed6 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP4U46_RS03755Primary locus identifier stored in the genes table.
Old locus tagP4U46_03745Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARMBR010000009.1Sequence record reported by the local genomic context database.
Genomic interval113 549-115 426 nt1 878 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span113 549-116 112 ntGCF_036211445::NZ_JARMBR010000009.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036211445::NZ_JARMBR010000009.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARMBR010000009.1All displayed genes belong to this local TCS context.
Neighborhood span113 549-116 112 nt2 564 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
113 549 nt116 112 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
P4U46_RS03755GCF_036211445#P4U46_RS03755
HKClassicCurrent focus
113 549-115 426 nt · Reverse (-)
P4U46_RS03760GCF_036211445#P4U46_RS03760
RROmpR
115 423-116 112 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002118195#S3E15_RS11825Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0959749
Simplified PFAM architecture for HKOC_0959749
PFAM domain coverage: 226 / 625 aa (36.2%)
1 aa625 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[337-386] | HisKA[406-470] | HATPase_c[514-624]
- Domain count: 3
- Matched identifier: HKOC_0959749
- Positioned domains: HAMP 337-386 ; HisKA 406-470 ; HATPase_c 514-624
Cluster members and taxonomy
Representative gene: GCF_002118195#S3E15_RS11825
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_036211445
AssemblyASM3621144v1 · Scaffoldhaploid
Genome composition5 855 952 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 135 · HK 72 · RR 63CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key