1 Response_reg#1
4-116 aa · 113 aa · 56.5% of protein
Raw token
Response_reg:4:2.4e-26:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P4T74_RS01990
Response regulator NarL family
Bacillus mycoides · GCF_036209805
ClassRRTypeNarLLength200 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_036209805#P4T74_RS01990Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length200 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 200 aa (84.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa200 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
139-194 aa · 56 aa · 28.0% of protein
Raw token
HTH_LUXR:139:9.12e-19:194:56:58- Raw architecture: Response_reg:4:2.4e-26:116:113:111#HTH_LUXR:139:9.12e-19:194:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_036209805::NZ_JARLYM010000006.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span184904-186633Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP4T74_01990RefSeq proteinWP_328054020.1
Context group ID
GCF_036209805::NZ_JARLYM010000006.1::G00004Context members
P4T74_RS01990P4T74_RS01995
Partner locus tags
P4T74_RS01990P4T74_RS01995
Partner old locus tags
P4T74_01990P4T74_01995
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_328054020.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP4T74_RS01990Primary locus identifier stored in the genes table.
Old locus tagP4T74_01990Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARLYM010000006.1Sequence record reported by the local genomic context database.
Genomic interval184 904-185 506 nt603 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span184 904-186 633 ntGCF_036209805::NZ_JARLYM010000006.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036209805::NZ_JARLYM010000006.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARLYM010000006.1All displayed genes belong to this local TCS context.
Neighborhood span184 904-186 633 nt1 730 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
184 904 nt186 633 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
P4T74_RS01990GCF_036209805#P4T74_RS01990
RRNarLCurrent focus
184 904-185 506 nt · Reverse (-)
P4T74_RS01995GCF_036209805#P4T74_RS01995
HKClassic
185 503-186 633 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_036209805#P4T74_RS01990The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2140945
Simplified PFAM architecture for RROC_2140945
PFAM domain coverage: 168 / 200 aa (84.0%)
1 aa200 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-116] | GerE[139-193]
- Domain count: 2
- Matched identifier: RROC_2140945
- Positioned domains: Response_reg 4-116 ; GerE 139-193
Cluster members and taxonomy
Representative gene: GCF_036209805#P4T74_RS01990
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_036209805
AssemblyASM3620980v1 · Scaffoldhaploid
Genome composition6 137 250 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 129 · HK 69 · RR 60CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key