1 Response_reg#1
3-113 aa · 111 aa · 49.6% of protein
Raw token
Response_reg:3:4.2e-40:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P4T72_RS28790
Response regulator OmpR family
Bacillus nitratireducens · GCF_036209665
ClassRRTypeOmpRLength224 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_036209665#P4T72_RS28790Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length224 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 224 aa (83.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa224 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-220 aa · 76 aa · 33.9% of protein
Raw token
Trans_reg_C:145:2.34e-30:220:77:77- Raw architecture: Response_reg:3:4.2e-40:113:111:111#Trans_reg_C:145:2.34e-30:220:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_036209665::NZ_JARLYH010000049.1::G00064
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3223-5267Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP4T72_28730RefSeq proteinWP_071735337.1
Context group ID
GCF_036209665::NZ_JARLYH010000049.1::G00064Context members
P4T72_RS28790P4T72_RS28795
Partner locus tags
P4T72_RS28790P4T72_RS28795
Partner old locus tags
P4T72_28730P4T72_28735
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_071735337.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP4T72_RS28790Primary locus identifier stored in the genes table.
Old locus tagP4T72_28730Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARLYH010000049.1Sequence record reported by the local genomic context database.
Genomic interval3 223-3 897 nt675 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span3 223-5 267 ntGCF_036209665::NZ_JARLYH010000049.1::G00064
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036209665::NZ_JARLYH010000049.1::G00064Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARLYH010000049.1All displayed genes belong to this local TCS context.
Neighborhood span3 223-5 267 nt2 045 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 223 nt5 267 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
P4T72_RS28790GCF_036209665#P4T72_RS28790
RROmpRCurrent focus
3 223-3 897 nt · Forward (+)
P4T72_RS28795GCF_036209665#P4T72_RS28795
HKClassic
3 894-5 267 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001884135#BAU23_RS24905Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1538114
Simplified PFAM architecture for RROC_1538114
PFAM domain coverage: 186 / 224 aa (83.0%)
1 aa224 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-113] | Trans_reg_C[146-220]
- Domain count: 2
- Matched identifier: RROC_1538114
- Positioned domains: Response_reg 3-113 ; Response_reg 3-113 ; Trans_reg_C 146-220 ; Trans_reg_C 146-220
Cluster members and taxonomy
Representative gene: GCF_001884135#BAU23_RS24905
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 026 193 · GCF_036209665
AssemblyASM3620966v1 · Scaffoldhaploid
Genome composition5 706 001 bp · 35,0% GCBacillus nitratireducens
Signal transduction countsGenes 114 · HK 62 · RR 52CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key