1 Response_reg#1
5-114 aa · 110 aa · 46.4% of protein
Raw token
Response_reg:5:5.29e-40:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P4T72_RS00245
Response regulator OmpR family
Bacillus nitratireducens · GCF_036209665
ClassRRTypeOmpRLength237 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_036209665#P4T72_RS00245Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 237 aa (78.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa237 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-229 aa · 77 aa · 32.5% of protein
Raw token
Trans_reg_C:153:1.33e-33:229:77:77- Raw architecture: Response_reg:5:5.29e-40:114:111:111#Trans_reg_C:153:1.33e-33:229:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_036209665::NZ_JARLYH010000004.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span6678-8446Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP4T72_00245RefSeq proteinWP_328020852.1
Context group ID
GCF_036209665::NZ_JARLYH010000004.1::G00001Context members
P4T72_RS00245P4T72_RS00250
Partner locus tags
P4T72_RS00245P4T72_RS00250
Partner old locus tags
P4T72_00245P4T72_00250
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_328020852.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP4T72_RS00245Primary locus identifier stored in the genes table.
Old locus tagP4T72_00245Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARLYH010000004.1Sequence record reported by the local genomic context database.
Genomic interval6 678-7 391 nt714 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span6 678-8 446 ntGCF_036209665::NZ_JARLYH010000004.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036209665::NZ_JARLYH010000004.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARLYH010000004.1All displayed genes belong to this local TCS context.
Neighborhood span6 678-8 446 nt1 769 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 678 nt8 446 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
P4T72_RS00245GCF_036209665#P4T72_RS00245
RROmpRCurrent focus
6 678-7 391 nt · Forward (+)
P4T72_RS00250GCF_036209665#P4T72_RS00250
HKClassic
7 388-8 446 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_036209665#P4T72_RS00245The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0980212
Simplified PFAM architecture for RROC_0980212
PFAM domain coverage: 186 / 237 aa (78.5%)
1 aa237 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[153-229]
- Domain count: 2
- Matched identifier: RROC_0980212
- Positioned domains: Response_reg 5-113 ; Trans_reg_C 153-229
Cluster members and taxonomy
Representative gene: GCF_036209665#P4T72_RS00245
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 026 193 · GCF_036209665
AssemblyASM3620966v1 · Scaffoldhaploid
Genome composition5 706 001 bp · 35,0% GCBacillus nitratireducens
Signal transduction countsGenes 114 · HK 62 · RR 52CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key