1 Response_reg#1
5-114 aa · 110 aa · 48.0% of protein
Raw token
Response_reg:5:7.76e-35:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P4T72_RS01265
Response regulator OmpR family
Bacillus nitratireducens · GCF_036209665
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_036209665#P4T72_RS01265Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 229 aa (79.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-225 aa · 71 aa · 31.0% of protein
Raw token
Trans_reg_C:155:1.04e-28:225:74:77- Raw architecture: Response_reg:5:7.76e-35:114:111:111#Trans_reg_C:155:1.04e-28:225:74:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_036209665::NZ_JARLYH010000006.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span74929-77468Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP4T72_01255RefSeq proteinWP_328021089.1
Context group ID
GCF_036209665::NZ_JARLYH010000006.1::G00005Context members
P4T72_RS01260P4T72_RS01265
Partner locus tags
P4T72_RS01260P4T72_RS01265
Partner old locus tags
P4T72_01250P4T72_01255
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_328021089.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP4T72_RS01265Primary locus identifier stored in the genes table.
Old locus tagP4T72_01255Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARLYH010000006.1Sequence record reported by the local genomic context database.
Genomic interval76 779-77 468 nt690 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span74 929-77 468 ntGCF_036209665::NZ_JARLYH010000006.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036209665::NZ_JARLYH010000006.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARLYH010000006.1All displayed genes belong to this local TCS context.
Neighborhood span74 929-77 468 nt2 540 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
74 929 nt77 468 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
P4T72_RS01260GCF_036209665#P4T72_RS01260
HKClassic
74 929-76 782 nt · Reverse (-)
P4T72_RS01265GCF_036209665#P4T72_RS01265
RROmpRCurrent focus
76 779-77 468 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_036209665#P4T72_RS01265The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1284752
Simplified PFAM architecture for RROC_1284752
PFAM domain coverage: 181 / 229 aa (79.0%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[154-225]
- Domain count: 2
- Matched identifier: RROC_1284752
- Positioned domains: Response_reg 5-113 ; Trans_reg_C 154-225
Cluster members and taxonomy
Representative gene: GCF_036209665#P4T72_RS01265
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 026 193 · GCF_036209665
AssemblyASM3620966v1 · Scaffoldhaploid
Genome composition5 706 001 bp · 35,0% GCBacillus nitratireducens
Signal transduction countsGenes 114 · HK 62 · RR 52CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key