1 HAMP#1
39-109 aa · 71 aa · 19.8% of protein
Raw token
HAMP:39:0.00000000165:109:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P4T72_RS00465
Histidine kinase, Classic
Bacillus nitratireducens · GCF_036209665
ClassHKTypeClassicLength359 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_036209665#P4T72_RS00465Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length359 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage246 / 359 aa (68.5%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa359 aa
Domain-by-domain annotation3 items
2 HisKA#2
120-185 aa · 66 aa · 18.4% of protein
Raw token
HisKA:120:1.92e-17:185:66:643 HATPase_c#3
238-346 aa · 109 aa · 30.4% of protein
Raw token
HATPase_c:238:1.36e-25:346:109:109- Raw architecture: HAMP:39:0.00000000165:109:71:69#HisKA:120:1.92e-17:185:66:64#HATPase_c:238:1.36e-25:346:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_036209665::NZ_JARLYH010000005.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span34966-36755Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP4T72_00460RefSeq proteinWP_328020899.1
Context group ID
GCF_036209665::NZ_JARLYH010000005.1::G00003Context members
P4T72_RS00460P4T72_RS00465
Partner locus tags
P4T72_RS00460P4T72_RS00465
Partner old locus tags
P4T72_00455P4T72_00460
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_328020899.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP4T72_RS00465Primary locus identifier stored in the genes table.
Old locus tagP4T72_00460Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARLYH010000005.1Sequence record reported by the local genomic context database.
Genomic interval35 676-36 755 nt1 080 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span34 966-36 755 ntGCF_036209665::NZ_JARLYH010000005.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036209665::NZ_JARLYH010000005.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARLYH010000005.1All displayed genes belong to this local TCS context.
Neighborhood span34 966-36 755 nt1 790 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
34 966 nt36 755 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
P4T72_RS00460GCF_036209665#P4T72_RS00460
RROmpR
34 966-35 679 nt · Forward (+)
P4T72_RS00465GCF_036209665#P4T72_RS00465
HKClassicCurrent focus
35 676-36 755 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_036209665#P4T72_RS00465The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2756834
Simplified PFAM architecture for HKOC_2756834
PFAM domain coverage: 229 / 359 aa (63.8%)
1 aa359 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[56-109] | HisKA[121-185] | HATPase_c[238-347]
- Domain count: 3
- Matched identifier: HKOC_2756834
- Positioned domains: HAMP 56-109 ; HisKA 121-185 ; HATPase_c 238-347
Cluster members and taxonomy
Representative gene: GCF_036209665#P4T72_RS00465
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 026 193 · GCF_036209665
AssemblyASM3620966v1 · Scaffoldhaploid
Genome composition5 706 001 bp · 35,0% GCBacillus nitratireducens
Signal transduction countsGenes 114 · HK 62 · RR 52CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key