1 Response_reg#1
13-122 aa · 110 aa · 48.2% of protein
Raw token
Response_reg:13:6.69e-35:122:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P4T46_RS00240
Response regulator OmpR family
Bacillus mycoides · GCF_036209605
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_036209605#P4T46_RS00240Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 228 aa (78.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
157-226 aa · 70 aa · 30.7% of protein
Raw token
Trans_reg_C:157:2.01e-29:226:75:77- Raw architecture: Response_reg:13:6.69e-35:122:111:111#Trans_reg_C:157:2.01e-29:226:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_036209605::NZ_JARLYE010000002.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span21351-23574Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP4T46_00245RefSeq proteinWP_002169576.1
Context group ID
GCF_036209605::NZ_JARLYE010000002.1::G00001Context members
P4T46_RS00235P4T46_RS00240
Partner locus tags
P4T46_RS00235P4T46_RS00240
Partner old locus tags
P4T46_00240P4T46_00245
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002169576.1Primary protein accession used for annex mappings.
UniProt accessionA0AAP8BCJ8Primary UniProt accession resolved in the annex database.
UniProt IDA0AAP8BCJ8_BACMYDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP4T46_RS00240Primary locus identifier stored in the genes table.
Old locus tagP4T46_00245Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARLYE010000002.1Sequence record reported by the local genomic context database.
Genomic interval22 888-23 574 nt687 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span21 351-23 574 ntGCF_036209605::NZ_JARLYE010000002.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036209605::NZ_JARLYE010000002.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARLYE010000002.1All displayed genes belong to this local TCS context.
Neighborhood span21 351-23 574 nt2 224 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
21 351 nt23 574 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
P4T46_RS00235GCF_036209605#P4T46_RS00235
HKClassic
21 351-22 874 nt · Reverse (-)
P4T46_RS00240GCF_036209605#P4T46_RS00240
RROmpRCurrent focus
22 888-23 574 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000290695#IKM_RS26790Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1303342
Simplified PFAM architecture for RROC_1303342
PFAM domain coverage: 178 / 228 aa (78.1%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[13-121] | Trans_reg_C[157-225]
- Domain count: 2
- Matched identifier: RROC_1303342
- Positioned domains: Response_reg 13-121 ; Response_reg 13-121 ; Trans_reg_C 157-225 ; Trans_reg_C 157-225
Cluster members and taxonomy
Representative gene: GCF_000290695#IKM_RS26790
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_036209605
AssemblyASM3620960v1 · Scaffoldhaploid
Genome composition5 866 275 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 134 · HK 71 · RR 63CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key