1 HAMP#1
188-257 aa · 70 aa · 13.8% of protein
Raw token
HAMP:188:0.00000000000000179:257:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P4T46_RS00235
Histidine kinase, Classic
Bacillus mycoides · GCF_036209605
ClassHKTypeClassicLength507 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_036209605#P4T46_RS00235Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length507 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage250 / 507 aa (49.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa507 aa
Domain-by-domain annotation3 items
2 HisKA#2
282-347 aa · 66 aa · 13.0% of protein
Raw token
HisKA:282:0.000000000000283:347:66:643 HATPase_c#3
393-506 aa · 114 aa · 22.5% of protein
Raw token
HATPase_c:393:2.05e-16:506:116:109- Raw architecture: HAMP:188:0.00000000000000179:257:70:69#HisKA:282:0.000000000000283:347:66:64#HATPase_c:393:2.05e-16:506:116:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_036209605::NZ_JARLYE010000002.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span21351-23574Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP4T46_00240RefSeq proteinWP_002187442.1
Context group ID
GCF_036209605::NZ_JARLYE010000002.1::G00001Context members
P4T46_RS00235P4T46_RS00240
Partner locus tags
P4T46_RS00235P4T46_RS00240
Partner old locus tags
P4T46_00240P4T46_00245
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002187442.1Primary protein accession used for annex mappings.
UniProt accessionA0AAP8BCK0Primary UniProt accession resolved in the annex database.
UniProt IDA0AAP8BCK0_BACMYDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP4T46_RS00235Primary locus identifier stored in the genes table.
Old locus tagP4T46_00240Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARLYE010000002.1Sequence record reported by the local genomic context database.
Genomic interval21 351-22 874 nt1 524 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span21 351-23 574 ntGCF_036209605::NZ_JARLYE010000002.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036209605::NZ_JARLYE010000002.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARLYE010000002.1All displayed genes belong to this local TCS context.
Neighborhood span21 351-23 574 nt2 224 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
21 351 nt23 574 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
P4T46_RS00235GCF_036209605#P4T46_RS00235
HKClassicCurrent focus
21 351-22 874 nt · Reverse (-)
P4T46_RS00240GCF_036209605#P4T46_RS00240
RROmpR
22 888-23 574 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000290695#IKM_RS26785Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1440543
Simplified PFAM architecture for HKOC_1440543
PFAM domain coverage: 227 / 507 aa (44.8%)
1 aa507 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[206-257] | HisKA[283-347] | HATPase_c[396-505]
- Domain count: 3
- Matched identifier: HKOC_1440543
- Positioned domains: HAMP 206-257 ; HisKA 283-347 ; HATPase_c 396-505
Cluster members and taxonomy
Representative gene: GCF_000290695#IKM_RS26785
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_036209605
AssemblyASM3620960v1 · Scaffoldhaploid
Genome composition5 866 275 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 134 · HK 71 · RR 63CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key