1 HAMP#1
309-376 aa · 68 aa · 11.1% of protein
Raw token
HAMP:309:0.00000000000019:376:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P4T56_RS08010
Histidine kinase, Classic
Bacillus nitratireducens · GCF_036209205
ClassHKTypeClassicLength615 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_036209205#P4T56_RS08010Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length615 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage238 / 615 aa (38.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa615 aa
Domain-by-domain annotation3 items
2 HisKA#2
396-460 aa · 65 aa · 10.6% of protein
Raw token
HisKA:396:0.000000000000308:460:65:643 HATPase_c#3
507-611 aa · 105 aa · 17.1% of protein
Raw token
HATPase_c:507:8.02e-22:611:106:109- Raw architecture: HAMP:309:0.00000000000019:376:68:69#HisKA:396:0.000000000000308:460:65:64#HATPase_c:507:8.02e-22:611:106:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_036209205::NZ_JARLXK010000008.1::G00023
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span18095-19942Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP4T56_07990RefSeq proteinWP_098219613.1
Context group ID
GCF_036209205::NZ_JARLXK010000008.1::G00023Context members
P4T56_RS08010
Partner locus tags
P4T56_RS08010
Partner old locus tags
P4T56_07990
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_098219613.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP4T56_RS08010Primary locus identifier stored in the genes table.
Old locus tagP4T56_07990Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARLXK010000008.1Sequence record reported by the local genomic context database.
Genomic interval18 095-19 942 nt1 848 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span18 095-19 942 ntGCF_036209205::NZ_JARLXK010000008.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036209205::NZ_JARLXK010000008.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARLXK010000008.1All displayed genes belong to this local TCS context.
Neighborhood span18 095-19 942 nt1 848 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
18 095 nt19 942 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
P4T56_RS08010GCF_036209205#P4T56_RS08010
HKClassicCurrent focus
18 095-19 942 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_036209205#P4T56_RS08010The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0990493
Simplified PFAM architecture for HKOC_0990493
PFAM domain coverage: 222 / 615 aa (36.1%)
1 aa615 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[327-376] | HisKA[396-460] | HATPase_c[506-612]
- Domain count: 3
- Matched identifier: HKOC_0990493
- Positioned domains: HAMP 327-376 ; HisKA 396-460 ; HATPase_c 506-612
Cluster members and taxonomy
Representative gene: GCF_036209205#P4T56_RS08010
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 026 193 · GCF_036209205
AssemblyASM3620920v1 · Scaffoldhaploid
Genome composition5 928 555 bp · 35,0% GCBacillus nitratireducens
Signal transduction countsGenes 109 · HK 61 · RR 48CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key