1 MEDS#1
21-172 aa · 152 aa · 25.9% of protein
Raw token
MEDS:21:6.96e-21:172:159:160P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P9F13_RS12270
Histidine kinase, Classic
Alkalihalophilus marmarensis · GCF_035812635
ClassHKTypeClassicLength588 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_035812635#P9F13_RS12270Stable P2CS identifier used across views.
GenomeGCF_035812635Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
MEDSHisKAHATPase_c
Protein length588 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage313 / 588 aa (53.2%)Merged over positioned domains only.
Domain description1 MEDS,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa588 aa
Domain-by-domain annotation3 items
2 HisKA#2
361-417 aa · 57 aa · 9.7% of protein
Raw token
HisKA:361:0.000000000000829:417:58:643 HATPase_c#3
465-568 aa · 104 aa · 17.7% of protein
Raw token
HATPase_c:465:5.14e-32:568:107:109- Raw architecture: MEDS:21:6.96e-21:172:159:160#HisKA:361:0.000000000000829:417:58:64#HATPase_c:465:5.14e-32:568:107:109
- Domain description: 1 MEDS,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_035812635::NZ_JARSOQ010000010.1::G00028
Group size22 locus tags listed below.
HK / RR2 / 0Counts resolved for the local TCS neighborhood.
Context span213757-217534Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP9F13_12260RefSeq proteinWP_326239787.1
Context group ID
GCF_035812635::NZ_JARSOQ010000010.1::G00028Context members
P9F13_RS12265P9F13_RS12270
Partner locus tags
P9F13_RS12265P9F13_RS12270
Partner old locus tags
P9F13_12255P9F13_12260
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_326239787.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP9F13_RS12270Primary locus identifier stored in the genes table.
Old locus tagP9F13_12260Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARSOQ010000010.1Sequence record reported by the local genomic context database.
Genomic interval215 768-217 534 nt1 767 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span213 757-217 534 ntGCF_035812635::NZ_JARSOQ010000010.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_035812635::NZ_JARSOQ010000010.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARSOQ010000010.1All displayed genes belong to this local TCS context.
Neighborhood span213 757-217 534 nt3 778 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
213 757 nt217 534 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
P9F13_RS12265GCF_035812635#P9F13_RS12265
HKClassic
213 757-215 520 nt · Forward (+)
P9F13_RS12270GCF_035812635#P9F13_RS12270
HKClassicCurrent focus
215 768-217 534 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_035812635#P9F13_RS12270The current gene is the representative for this cluster.
PFAM architectureMEDS + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1124032
Simplified PFAM architecture for HKOC_1124032
PFAM domain coverage: 313 / 588 aa (53.2%)
1 aa588 aa
MEDSHisKAHATPase_c
- Simplified architecture: MEDS + HisKA + HATPase_c
- Raw architecture: MEDS[21-172] | HisKA[361-418] | HATPase_c[465-567]
- Domain count: 3
- Matched identifier: HKOC_1124032
- Positioned domains: MEDS 21-172 ; HisKA 361-418 ; HATPase_c 465-567
Cluster members and taxonomy
Representative gene: GCF_035812635#P9F13_RS12270
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 521 377 · GCF_035812635
AssemblyASM3581263v1 · Scaffoldhaploid
Genome composition4 162 042 bp · 40,0% GCAlkalihalophilus marmarensis
Signal transduction countsGenes 66 · HK 34 · RR 32CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key