1 HAMP#1
190-259 aa · 70 aa · 7.3% of protein
Raw token
HAMP:190:0.000000000232:259:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P9F13_RS01720
Histidine kinase, Hybrid
Alkalihalophilus marmarensis · GCF_035812635
ClassHKTypeHybridLength960 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_035812635#P9F13_RS01720Stable P2CS identifier used across views.
GenomeGCF_035812635Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_cResponse_reg
Protein length960 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage369 / 960 aa (38.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa960 aa
Domain-by-domain annotation4 items
2 HisKA#2
581-647 aa · 67 aa · 7.0% of protein
Raw token
HisKA:581:3.14e-20:647:67:643 HATPase_c#3
691-801 aa · 111 aa · 11.6% of protein
Raw token
HATPase_c:691:9.42e-34:801:111:1094 Response_reg#4
818-938 aa · 121 aa · 12.6% of protein
Raw token
Response_reg:818:0.000000000588:938:123:111- Raw architecture: HAMP:190:0.000000000232:259:70:69#HisKA:581:3.14e-20:647:67:64#HATPase_c:691:9.42e-34:801:111:109#Response_reg:818:0.000000000588:938:123:111
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_035812635::NZ_JARSOQ010000001.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span301219-304456Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP9F13_01720RefSeq proteinWP_326238073.1
Context group ID
GCF_035812635::NZ_JARSOQ010000001.1::G00005Context members
P9F13_RS01715P9F13_RS01720
Partner locus tags
P9F13_RS01715P9F13_RS01720
Partner old locus tags
P9F13_01715P9F13_01720
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_326238073.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP9F13_RS01720Primary locus identifier stored in the genes table.
Old locus tagP9F13_01720Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARSOQ010000001.1Sequence record reported by the local genomic context database.
Genomic interval301 574-304 456 nt2 883 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span301 219-304 456 ntGCF_035812635::NZ_JARSOQ010000001.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_035812635::NZ_JARSOQ010000001.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARSOQ010000001.1All displayed genes belong to this local TCS context.
Neighborhood span301 219-304 456 nt3 238 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
301 219 nt304 456 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
P9F13_RS01715GCF_035812635#P9F13_RS01715
RRCheY
301 219-301 581 nt · Forward (+)
P9F13_RS01720GCF_035812635#P9F13_RS01720
HKHybridCurrent focus
301 574-304 456 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_035812635#P9F13_RS01720The current gene is the representative for this cluster.
PFAM architecture4HB_MCP_1 + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0318146
Simplified PFAM architecture for HKOC_0318146
PFAM domain coverage: 463 / 960 aa (48.2%)
1 aa960 aa
4HB_MCP_1HisKAHATPase_cResponse_reg
- Simplified architecture: 4HB_MCP_1 + HisKA + HATPase_c + Response_reg
- Raw architecture: 4HB_MCP_1[12-174] | HisKA[581-647] | HATPase_c[691-802] | Response_reg[818-938]
- Domain count: 4
- Matched identifier: HKOC_0318146
- Positioned domains: 4HB_MCP_1 12-174 ; HisKA 581-647 ; HATPase_c 691-802 ; Response_reg 818-938
Cluster members and taxonomy
Representative gene: GCF_035812635#P9F13_RS01720
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 521 377 · GCF_035812635
AssemblyASM3581263v1 · Scaffoldhaploid
Genome composition4 162 042 bp · 40,0% GCAlkalihalophilus marmarensis
Signal transduction countsGenes 66 · HK 34 · RR 32CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key