1 HAMP#1
168-237 aa · 70 aa · 14.9% of protein
Raw token
HAMP:168:8.19e-18:237:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P9F13_RS10220
Histidine kinase, Classic
Alkalihalophilus marmarensis · GCF_035812635
ClassHKTypeClassicLength469 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_035812635#P9F13_RS10220Stable P2CS identifier used across views.
GenomeGCF_035812635Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length469 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage246 / 469 aa (52.5%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa469 aa
Domain-by-domain annotation3 items
2 HisKA#2
241-307 aa · 67 aa · 14.3% of protein
Raw token
HisKA:241:3.15e-16:307:67:643 HATPase_c#3
353-461 aa · 109 aa · 23.2% of protein
Raw token
HATPase_c:353:6.45e-30:461:109:109- Raw architecture: HAMP:168:8.19e-18:237:70:69#HisKA:241:3.15e-16:307:67:64#HATPase_c:353:6.45e-30:461:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_035812635::NZ_JARSOQ010000008.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span101843-103946Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP9F13_10210RefSeq proteinWP_326239397.1
Context group ID
GCF_035812635::NZ_JARSOQ010000008.1::G00025Context members
P9F13_RS10215P9F13_RS10220
Partner locus tags
P9F13_RS10215P9F13_RS10220
Partner old locus tags
P9F13_10205P9F13_10210
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_326239397.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP9F13_RS10220Primary locus identifier stored in the genes table.
Old locus tagP9F13_10210Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARSOQ010000008.1Sequence record reported by the local genomic context database.
Genomic interval102 537-103 946 nt1 410 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span101 843-103 946 ntGCF_035812635::NZ_JARSOQ010000008.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_035812635::NZ_JARSOQ010000008.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARSOQ010000008.1All displayed genes belong to this local TCS context.
Neighborhood span101 843-103 946 nt2 104 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
101 843 nt103 946 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
P9F13_RS10215GCF_035812635#P9F13_RS10215
RROmpR
101 843-102 544 nt · Forward (+)
P9F13_RS10220GCF_035812635#P9F13_RS10220
HKClassicCurrent focus
102 537-103 946 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_035812635#P9F13_RS10220The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1734043
Simplified PFAM architecture for HKOC_1734043
PFAM domain coverage: 229 / 469 aa (48.8%)
1 aa469 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[185-236] | HisKA[241-307] | HATPase_c[354-463]
- Domain count: 3
- Matched identifier: HKOC_1734043
- Positioned domains: HAMP 185-236 ; HisKA 241-307 ; HATPase_c 354-463
Cluster members and taxonomy
Representative gene: GCF_035812635#P9F13_RS10220
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 521 377 · GCF_035812635
AssemblyASM3581263v1 · Scaffoldhaploid
Genome composition4 162 042 bp · 40,0% GCAlkalihalophilus marmarensis
Signal transduction countsGenes 66 · HK 34 · RR 32CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key