1 Response_reg#1
8-116 aa · 109 aa · 46.8% of protein
Raw token
Response_reg:8:6.76e-38:116:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P9F13_RS10215
Response regulator OmpR family
Alkalihalophilus marmarensis · GCF_035812635
ClassRRTypeOmpRLength233 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_035812635#P9F13_RS10215Stable P2CS identifier used across views.
GenomeGCF_035812635Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 233 aa (79.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa233 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
152-227 aa · 76 aa · 32.6% of protein
Raw token
Trans_reg_C:152:1.42e-32:227:77:77- Raw architecture: Response_reg:8:6.76e-38:116:109:111#Trans_reg_C:152:1.42e-32:227:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_035812635::NZ_JARSOQ010000008.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span101843-103946Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP9F13_10205RefSeq proteinWP_326239396.1
Context group ID
GCF_035812635::NZ_JARSOQ010000008.1::G00025Context members
P9F13_RS10215P9F13_RS10220
Partner locus tags
P9F13_RS10215P9F13_RS10220
Partner old locus tags
P9F13_10205P9F13_10210
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_326239396.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP9F13_RS10215Primary locus identifier stored in the genes table.
Old locus tagP9F13_10205Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARSOQ010000008.1Sequence record reported by the local genomic context database.
Genomic interval101 843-102 544 nt702 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span101 843-103 946 ntGCF_035812635::NZ_JARSOQ010000008.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_035812635::NZ_JARSOQ010000008.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARSOQ010000008.1All displayed genes belong to this local TCS context.
Neighborhood span101 843-103 946 nt2 104 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
101 843 nt103 946 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
P9F13_RS10215GCF_035812635#P9F13_RS10215
RROmpRCurrent focus
101 843-102 544 nt · Forward (+)
P9F13_RS10220GCF_035812635#P9F13_RS10220
HKClassic
102 537-103 946 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_035812635#P9F13_RS10215The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1106940
Simplified PFAM architecture for RROC_1106940
PFAM domain coverage: 185 / 233 aa (79.4%)
1 aa233 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[8-117] | Trans_reg_C[153-227]
- Domain count: 2
- Matched identifier: RROC_1106940
- Positioned domains: Response_reg 8-117 ; Trans_reg_C 153-227
Cluster members and taxonomy
Representative gene: GCF_035812635#P9F13_RS10215
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 521 377 · GCF_035812635
AssemblyASM3581263v1 · Scaffoldhaploid
Genome composition4 162 042 bp · 40,0% GCAlkalihalophilus marmarensis
Signal transduction countsGenes 66 · HK 34 · RR 32CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key