1 HisKA_3#1
179-242 aa · 64 aa · 17.0% of protein
Raw token
HisKA_3:179:6.76e-26:242:64:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P9F13_RS10180
Histidine kinase, Classic
Alkalihalophilus marmarensis · GCF_035812635
ClassHKTypeClassicLength376 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_035812635#P9F13_RS10180Stable P2CS identifier used across views.
GenomeGCF_035812635Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length376 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage144 / 376 aa (38.3%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa376 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
287-366 aa · 80 aa · 21.3% of protein
Raw token
HATPase_c:287:0.0000000000039:366:97:109- Raw architecture: HisKA_3:179:6.76e-26:242:64:68#HATPase_c:287:0.0000000000039:366:97:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_035812635::NZ_JARSOQ010000008.1::G00024
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span95550-97281Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP9F13_10170RefSeq proteinWP_326239389.1
Context group ID
GCF_035812635::NZ_JARSOQ010000008.1::G00024Context members
P9F13_RS10180P9F13_RS10185
Partner locus tags
P9F13_RS10180P9F13_RS10185
Partner old locus tags
P9F13_10170P9F13_10175
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_326239389.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP9F13_RS10180Primary locus identifier stored in the genes table.
Old locus tagP9F13_10170Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARSOQ010000008.1Sequence record reported by the local genomic context database.
Genomic interval95 550-96 680 nt1 131 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span95 550-97 281 ntGCF_035812635::NZ_JARSOQ010000008.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_035812635::NZ_JARSOQ010000008.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARSOQ010000008.1All displayed genes belong to this local TCS context.
Neighborhood span95 550-97 281 nt1 732 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
95 550 nt97 281 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
P9F13_RS10180GCF_035812635#P9F13_RS10180
HKClassicCurrent focus
95 550-96 680 nt · Forward (+)
P9F13_RS10185GCF_035812635#P9F13_RS10185
RRNarL
96 682-97 281 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_035812635#P9F13_RS10180The current gene is the representative for this cluster.
PFAM architectureDesK_N + HisKA_3 + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2646332
Simplified PFAM architecture for HKOC_2646332
PFAM domain coverage: 300 / 376 aa (79.8%)
1 aa376 aa
DesK_NHisKA_3HATPase_c
- Simplified architecture: DesK_N + HisKA_3 + HATPase_c
- Raw architecture: DesK_N[1-151] | HisKA_3[179-244] | HATPase_c[284-366]
- Domain count: 3
- Matched identifier: HKOC_2646332
- Positioned domains: DesK_N 1-151 ; HisKA_3 179-244 ; HATPase_c 284-366
Cluster members and taxonomy
Representative gene: GCF_035812635#P9F13_RS10180
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 521 377 · GCF_035812635
AssemblyASM3581263v1 · Scaffoldhaploid
Genome composition4 162 042 bp · 40,0% GCAlkalihalophilus marmarensis
Signal transduction countsGenes 66 · HK 34 · RR 32CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key