1 Response_reg#1
4-113 aa · 110 aa · 48.7% of protein
Raw token
Response_reg:4:1.05e-23:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P9F13_RS10080
Response regulator OmpR family
Alkalihalophilus marmarensis · GCF_035812635
ClassRRTypeOmpRLength226 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_035812635#P9F13_RS10080Stable P2CS identifier used across views.
GenomeGCF_035812635Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 226 aa (80.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa226 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-222 aa · 72 aa · 31.9% of protein
Raw token
Trans_reg_C:151:3.26e-25:222:73:77- Raw architecture: Response_reg:4:1.05e-23:113:111:111#Trans_reg_C:151:3.26e-25:222:73:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_035812635::NZ_JARSOQ010000008.1::G00023
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span76814-77494Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP9F13_10070RefSeq proteinWP_326239371.1
Context group ID
GCF_035812635::NZ_JARSOQ010000008.1::G00023Context members
P9F13_RS10080
Partner locus tags
P9F13_RS10080
Partner old locus tags
P9F13_10070
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_326239371.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP9F13_RS10080Primary locus identifier stored in the genes table.
Old locus tagP9F13_10070Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARSOQ010000008.1Sequence record reported by the local genomic context database.
Genomic interval76 814-77 494 nt681 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span76 814-77 494 ntGCF_035812635::NZ_JARSOQ010000008.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_035812635::NZ_JARSOQ010000008.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARSOQ010000008.1All displayed genes belong to this local TCS context.
Neighborhood span76 814-77 494 nt681 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
76 814 nt77 494 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
P9F13_RS10080GCF_035812635#P9F13_RS10080
RROmpRCurrent focus
76 814-77 494 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_035812635#P9F13_RS10080The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1444211
Simplified PFAM architecture for RROC_1444211
PFAM domain coverage: 182 / 226 aa (80.5%)
1 aa226 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[151-222]
- Domain count: 2
- Matched identifier: RROC_1444211
- Positioned domains: Response_reg 4-113 ; Trans_reg_C 151-222
Cluster members and taxonomy
Representative gene: GCF_035812635#P9F13_RS10080
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 521 377 · GCF_035812635
AssemblyASM3581263v1 · Scaffoldhaploid
Genome composition4 162 042 bp · 40,0% GCAlkalihalophilus marmarensis
Signal transduction countsGenes 66 · HK 34 · RR 32CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key