1 Response_reg#1
5-117 aa · 113 aa · 51.8% of protein
Raw token
Response_reg:5:9.1e-35:117:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P9F13_RS07900
Response regulator NarL family
Alkalihalophilus marmarensis · GCF_035812635
ClassRRTypeNarLLength218 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_035812635#P9F13_RS07900Stable P2CS identifier used across views.
GenomeGCF_035812635Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length218 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 218 aa (77.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa218 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
153-208 aa · 56 aa · 25.7% of protein
Raw token
HTH_LUXR:153:5.56e-22:208:56:58- Raw architecture: Response_reg:5:9.1e-35:117:113:111#HTH_LUXR:153:5.56e-22:208:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_035812635::NZ_JARSOQ010000005.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span420314-422103Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP9F13_07895RefSeq proteinWP_326239107.1
Context group ID
GCF_035812635::NZ_JARSOQ010000005.1::G00016Context members
P9F13_RS07900P9F13_RS07905
Partner locus tags
P9F13_RS07900P9F13_RS07905
Partner old locus tags
P9F13_07895P9F13_07900
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_326239107.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP9F13_RS07900Primary locus identifier stored in the genes table.
Old locus tagP9F13_07895Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARSOQ010000005.1Sequence record reported by the local genomic context database.
Genomic interval420 314-420 970 nt657 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span420 314-422 103 ntGCF_035812635::NZ_JARSOQ010000005.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_035812635::NZ_JARSOQ010000005.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARSOQ010000005.1All displayed genes belong to this local TCS context.
Neighborhood span420 314-422 103 nt1 790 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
420 314 nt422 103 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
P9F13_RS07900GCF_035812635#P9F13_RS07900
RRNarLCurrent focus
420 314-420 970 nt · Reverse (-)
P9F13_RS07905GCF_035812635#P9F13_RS07905
HKClassic
420 967-422 103 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_035812635#P9F13_RS07900The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1833824
Simplified PFAM architecture for RROC_1833824
PFAM domain coverage: 169 / 218 aa (77.5%)
1 aa218 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[5-117] | GerE[153-208]
- Domain count: 2
- Matched identifier: RROC_1833824
- Positioned domains: Response_reg 5-117 ; GerE 153-208
Cluster members and taxonomy
Representative gene: GCF_035812635#P9F13_RS07900
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 521 377 · GCF_035812635
AssemblyASM3581263v1 · Scaffoldhaploid
Genome composition4 162 042 bp · 40,0% GCAlkalihalophilus marmarensis
Signal transduction countsGenes 66 · HK 34 · RR 32CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key