1 His_kinase#1
375-454 aa · 80 aa · 13.7% of protein
Raw token
His_kinase:375:3.99e-31:454:81:80P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P9F13_RS06130
Histidine kinase, Classic
Alkalihalophilus marmarensis · GCF_035812635
ClassHKTypeClassicLength582 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_035812635#P9F13_RS06130Stable P2CS identifier used across views.
GenomeGCF_035812635Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
His_kinaseHATPase_c
Protein length582 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage199 / 582 aa (34.2%)Merged over positioned domains only.
Domain description1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa582 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
459-577 aa · 119 aa · 20.4% of protein
Raw token
HATPase_c:459:1.81e-18:577:123:109- Raw architecture: His_kinase:375:3.99e-31:454:81:80#HATPase_c:459:1.81e-18:577:123:109
- Domain description: 1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_035812635::NZ_JARSOQ010000005.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span38484-40959Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP9F13_06125RefSeq proteinWP_326238711.1
Context group ID
GCF_035812635::NZ_JARSOQ010000005.1::G00011Context members
P9F13_RS06125P9F13_RS06130
Partner locus tags
P9F13_RS06125P9F13_RS06130
Partner old locus tags
P9F13_06120P9F13_06125
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_326238711.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP9F13_RS06130Primary locus identifier stored in the genes table.
Old locus tagP9F13_06125Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARSOQ010000005.1Sequence record reported by the local genomic context database.
Genomic interval39 211-40 959 nt1 749 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span38 484-40 959 ntGCF_035812635::NZ_JARSOQ010000005.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_035812635::NZ_JARSOQ010000005.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARSOQ010000005.1All displayed genes belong to this local TCS context.
Neighborhood span38 484-40 959 nt2 476 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
38 484 nt40 959 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
P9F13_RS06125GCF_035812635#P9F13_RS06125
RRLytTR
38 484-39 218 nt · Reverse (-)
P9F13_RS06130GCF_035812635#P9F13_RS06130
HKClassicCurrent focus
39 211-40 959 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_035812635#P9F13_RS06130The current gene is the representative for this cluster.
PFAM architecture5TM-5TMR_LYT + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1155174
Simplified PFAM architecture for HKOC_1155174
PFAM domain coverage: 364 / 582 aa (62.5%)
1 aa582 aa
5TM-5TMR_LYTHis_kinaseHATPase_c
- Simplified architecture: 5TM-5TMR_LYT + His_kinase + HATPase_c
- Raw architecture: 5TM-5TMR_LYT[27-207] | His_kinase[375-454] | HATPase_c[474-576]
- Domain count: 3
- Matched identifier: HKOC_1155174
- Positioned domains: 5TM-5TMR_LYT 27-207 ; His_kinase 375-454 ; HATPase_c 474-576
Cluster members and taxonomy
Representative gene: GCF_035812635#P9F13_RS06130
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 521 377 · GCF_035812635
AssemblyASM3581263v1 · Scaffoldhaploid
Genome composition4 162 042 bp · 40,0% GCAlkalihalophilus marmarensis
Signal transduction countsGenes 66 · HK 34 · RR 32CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key