1 Response_reg#1
9-121 aa · 113 aa · 48.5% of protein
Raw token
Response_reg:9:7.04e-35:121:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P9F13_RS04940
Response regulator NarL family
Alkalihalophilus marmarensis · GCF_035812635
ClassRRTypeNarLLength233 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_035812635#P9F13_RS04940Stable P2CS identifier used across views.
GenomeGCF_035812635Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 233 aa (73.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa233 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
167-224 aa · 58 aa · 24.9% of protein
Raw token
HTH_LUXR:167:6.52e-23:224:58:58- Raw architecture: Response_reg:9:7.04e-35:121:113:111#HTH_LUXR:167:6.52e-23:224:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_035812635::NZ_JARSOQ010000003.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span195973-197890Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP9F13_04935RefSeq proteinWP_326238533.1
Context group ID
GCF_035812635::NZ_JARSOQ010000003.1::G00010Context members
P9F13_RS04940P9F13_RS04945
Partner locus tags
P9F13_RS04940P9F13_RS04945
Partner old locus tags
P9F13_04935P9F13_04940
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_326238533.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP9F13_RS04940Primary locus identifier stored in the genes table.
Old locus tagP9F13_04935Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARSOQ010000003.1Sequence record reported by the local genomic context database.
Genomic interval195 973-196 674 nt702 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span195 973-197 890 ntGCF_035812635::NZ_JARSOQ010000003.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_035812635::NZ_JARSOQ010000003.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARSOQ010000003.1All displayed genes belong to this local TCS context.
Neighborhood span195 973-197 890 nt1 918 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
195 973 nt197 890 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
P9F13_RS04940GCF_035812635#P9F13_RS04940
RRNarLCurrent focus
195 973-196 674 nt · Reverse (-)
P9F13_RS04945GCF_035812635#P9F13_RS04945
HKClassic
196 766-197 890 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_035812635#P9F13_RS04940The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1106939
Simplified PFAM architecture for RROC_1106939
PFAM domain coverage: 169 / 233 aa (72.5%)
1 aa233 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[9-121] | GerE[169-224]
- Domain count: 2
- Matched identifier: RROC_1106939
- Positioned domains: Response_reg 9-121 ; GerE 169-224
Cluster members and taxonomy
Representative gene: GCF_035812635#P9F13_RS04940
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 521 377 · GCF_035812635
AssemblyASM3581263v1 · Scaffoldhaploid
Genome composition4 162 042 bp · 40,0% GCAlkalihalophilus marmarensis
Signal transduction countsGenes 66 · HK 34 · RR 32CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key